Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00589 ATGTCTAGGCTTTTGGTGCATTCTCTTAATGTCCCGGGCTTAGTGCCCGGGCAAAGGCATGGCAATAACAACAAGGTATTGGCGAAAGTAAGAAGGCCTGTCAAAATGATGTTTGCCACAGGAACCGCTGCCTCGAGAATGCCTGGTTTCTCGGGACTACGTACTGTTAACTCTTTGGATTCTATGTTGAGACCTAGACTAGATTTTCATTCTAAGGTGCTTACTCAAATTGGTACTAATCGAGCAAGGAGTGGAAGAGGTAACAGAGTCGTACCCAAAGCCAtgtttgagcgtttcaccgagaaagcaatcaaagtaattatgctggctcaggaggaagcaaggaggctaggtcacaattttgttggaacagaacagattctattgggtcttattggtgaaggcacaggtattgctgctaaggttctaaagtctatgggaattaacctaaaagatgcacgcgtggaagtggaaaagataattggaaggggtagtggtttcgtggctgttgagattccgtttactccccgtgccaagagagttttggaactctcATTGGAGGAAGCTCGGCAACTTGGTcacaattatattggatctgagcacttgcttctgggtcttcttcgagagggtgaaggtgtggcagcacgtgtccttgaaaatctgggtgctgatccaactaatattcgcacacagGTTATTCGCATGGTCGGTGAGGGGGCTGACAATGTTGGGGCTACTGTTGGTTCTGGAAGTAGTAACAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAAGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTCACTCAAATCTTGGGCCGTCGGACCAAAAATAATCCCTGTCTTATTGGGGAACCTGGTGTTGGAAAGACAGCTATTGCTGAAGGTCTTGCTCAACGGATTGCAAATGGTGATGTCCCCGAAACTATAGAGGGAAAGAAGGTTATAACCCTAGATATGGGTCTACTTGTTGCTGGAACTAAATACCGTGGAGAATTTGAGGAGAGATTGAAAAAACTAATGGAGGAGATCAAACAAAGTGATGAAATAATACTTTTCATTGATGAAGTCCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCAGCAAACATTTTGAAACCAGCTCTTGCCAGAGGTGAACTACAGTGTATTGGAGCCACAACACTAGATGAATATAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGGCGGTTCCAGCCAGTTAAAGTACCTGAGCCAACTGTGGATGAAACCATACAAATACTGAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACTGATGATGCTCTTGTAGCTGCTGCACAGCTATCACATCAATATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGAGTCCGACTTCAACATGCACAGTTACCAGAAGAAGCAAAGGAGCTTGAAAAGGAGGTTAGGAAGATTGTTAAGGAGAAAGATCAAGCTGTTCGCAACCAAGAATTTGAAAAGGCTGGAGAGCTACGGGATCAAGAAATGGATCTTAAGGCTCAGATATCAGCAGTTGTAGAAAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGGGATATAGGTGCACTTGTGACTGAGGTTGACATACAACATATTGTTGCTGCCTGGACTGGTATTCCTGTTGACAAAGTTTCGACGGACGAATCTGACCGCCTTCTCAAGATGGAAGACACCTTACACAAGAGAATTATTGGTCAGCATGAAGCAGTAGAAGCCATTAGCCGGGCTATCCGTCGTGCTCGTGTTGGACTTAAGAACCCTAACAGGCCAATCGCCAGCTTCATTTTTTCTGGGCCTACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCATTGGCTACATACTACTTTGGATCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACAGTCTCGAAACTCATTGGTTCACCTCCTGGATATGTTGGTTACACCGAGGGTGGTCAACTGACTGAGGCAGTTCGTCGTCGTCCCTACACAGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCCGACGTCTTCAACATGATGCTTCAAATCCTGGAAGATGGAAGGCTAACAGATAGCAAGGGAAGAACCGTGGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTTATTGAGAAAGGAGGCCGTCGTATAGGATTTGACCTTGACTATGATGAGAAGGATAGCAGTTATAATCGAATCAAGAGCTTGGTGACTGAGGAGCTGAAGCAATACTTCAGGCCAGAGTTTTTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAATTAACAAAACTTGAGGTAAAGGAGATAGCTGATATAATGCTGAAGGAGGTGTTTGAGAGACTGAAAGCCAAAGATATTGAGTTGTCAGTGACAGAGAGATTTAAGGAGAGAGTGGTCGACGAAGGTTATAATCCTAGTTATGGTGCCAGGCCTCTAAGAAGAGCCATAATGAGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTCGCTAGAGAGATTAAAGAGGGTGATTCtgtcatagtggatgctgattctgatggtaatgtgattgtgCTCAATGGCAGTAGTGGTGCTTCAGATTCATTGCCAGAGGCTCTTCCTGTTTAA 2781 0.3786 MSRLLVHSLNVPGLVPGQRHGNNNKVLAKVRRPVKMMFATGTAASRMPGFSGLRTVNSLDSMLRPRLDFHSKVLTQIGTNRARSGRGNRVVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGEGADNVGATVGSGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEAKELEKEVRKIVKEKDQAVRNQEFEKAGELRDQEMDLKAQISAVVEKGKEMSKAESEAGDIGALVTEVDIQHIVAAWTGIPVDKVSTDESDRLLKMEDTLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKAKDIELSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGASDSLPEALPV 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00589 926 Pfam Clp amino terminal domain, pathogenicity island component 110 162 IPR004176 -
Car06g00589 926 Pfam Clp amino terminal domain, pathogenicity island component 186 237 IPR004176 -
Car06g00589 926 CDD AAA 613 761 - -
Car06g00589 926 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 79 926 - -
Car06g00589 926 SMART ClpB_D2_small_2 819 909 IPR019489 -
Car06g00589 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 905 IPR027417 -
Car06g00589 926 Gene3D - 246 439 IPR027417 -
Car06g00589 926 Gene3D - 95 242 IPR036628 -
Car06g00589 926 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 643 661 IPR001270 GO:0005524
Car06g00589 926 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 688 706 IPR001270 GO:0005524
Car06g00589 926 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 717 735 IPR001270 GO:0005524
Car06g00589 926 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 750 764 IPR001270 GO:0005524
Car06g00589 926 Coils Coil 502 529 - -
Car06g00589 926 ProSitePatterns Chaperonins clpA/B signature 2. 673 691 IPR028299 -
Car06g00589 926 Pfam AAA domain (Cdc48 subfamily) 638 812 IPR003959 GO:0005524|GO:0016887
Car06g00589 926 Gene3D UVR domain 505 563 - -
Car06g00589 926 PANTHER ATP-DEPENDENT CLP PROTEASE 79 926 - -
Car06g00589 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 533 IPR027417 -
Car06g00589 926 Gene3D - 441 585 - -
Car06g00589 926 ProSiteProfiles Clp repeat (R) domain profile. 96 238 IPR004176 -
Car06g00589 926 Coils Coil 350 370 - -
Car06g00589 926 Gene3D - 819 918 - -
Car06g00589 926 ProSiteProfiles UVR domain profile. 513 548 IPR001943 GO:0005515
Car06g00589 926 Pfam ATPase family associated with various cellular activities (AAA) 301 417 IPR003959 GO:0005524|GO:0016887
Car06g00589 926 Pfam AAA lid domain 439 541 IPR041546 -
Car06g00589 926 ProSitePatterns Chaperonins clpA/B signature 1. 391 403 IPR018368 GO:0005524
Car06g00589 926 SMART AAA_5 296 436 IPR003593 -
Car06g00589 926 SMART AAA_5 639 820 IPR003593 -
Car06g00589 926 SUPERFAMILY Double Clp-N motif 97 237 IPR036628 -
Car06g00589 926 CDD AAA 279 431 - -
Car06g00589 926 Pfam C-terminal, D2-small domain, of ClpB protein 819 899 IPR019489 -
Car06g00589 926 Gene3D - 591 817 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00589 Car-Chr6 5951443 5957158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00589 K03696 - gmx:100796195 1611.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00589 06 5951443 5957158 Car05g02602 05 71045114 71052277 PCT