Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g00589 | ATGTCTAGGCTTTTGGTGCATTCTCTTAATGTCCCGGGCTTAGTGCCCGGGCAAAGGCATGGCAATAACAACAAGGTATTGGCGAAAGTAAGAAGGCCTGTCAAAATGATGTTTGCCACAGGAACCGCTGCCTCGAGAATGCCTGGTTTCTCGGGACTACGTACTGTTAACTCTTTGGATTCTATGTTGAGACCTAGACTAGATTTTCATTCTAAGGTGCTTACTCAAATTGGTACTAATCGAGCAAGGAGTGGAAGAGGTAACAGAGTCGTACCCAAAGCCAtgtttgagcgtttcaccgagaaagcaatcaaagtaattatgctggctcaggaggaagcaaggaggctaggtcacaattttgttggaacagaacagattctattgggtcttattggtgaaggcacaggtattgctgctaaggttctaaagtctatgggaattaacctaaaagatgcacgcgtggaagtggaaaagataattggaaggggtagtggtttcgtggctgttgagattccgtttactccccgtgccaagagagttttggaactctcATTGGAGGAAGCTCGGCAACTTGGTcacaattatattggatctgagcacttgcttctgggtcttcttcgagagggtgaaggtgtggcagcacgtgtccttgaaaatctgggtgctgatccaactaatattcgcacacagGTTATTCGCATGGTCGGTGAGGGGGCTGACAATGTTGGGGCTACTGTTGGTTCTGGAAGTAGTAACAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAAGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTCACTCAAATCTTGGGCCGTCGGACCAAAAATAATCCCTGTCTTATTGGGGAACCTGGTGTTGGAAAGACAGCTATTGCTGAAGGTCTTGCTCAACGGATTGCAAATGGTGATGTCCCCGAAACTATAGAGGGAAAGAAGGTTATAACCCTAGATATGGGTCTACTTGTTGCTGGAACTAAATACCGTGGAGAATTTGAGGAGAGATTGAAAAAACTAATGGAGGAGATCAAACAAAGTGATGAAATAATACTTTTCATTGATGAAGTCCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCAGCAAACATTTTGAAACCAGCTCTTGCCAGAGGTGAACTACAGTGTATTGGAGCCACAACACTAGATGAATATAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGGCGGTTCCAGCCAGTTAAAGTACCTGAGCCAACTGTGGATGAAACCATACAAATACTGAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACTGATGATGCTCTTGTAGCTGCTGCACAGCTATCACATCAATATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCCCGAGTCCGACTTCAACATGCACAGTTACCAGAAGAAGCAAAGGAGCTTGAAAAGGAGGTTAGGAAGATTGTTAAGGAGAAAGATCAAGCTGTTCGCAACCAAGAATTTGAAAAGGCTGGAGAGCTACGGGATCAAGAAATGGATCTTAAGGCTCAGATATCAGCAGTTGTAGAAAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGGGATATAGGTGCACTTGTGACTGAGGTTGACATACAACATATTGTTGCTGCCTGGACTGGTATTCCTGTTGACAAAGTTTCGACGGACGAATCTGACCGCCTTCTCAAGATGGAAGACACCTTACACAAGAGAATTATTGGTCAGCATGAAGCAGTAGAAGCCATTAGCCGGGCTATCCGTCGTGCTCGTGTTGGACTTAAGAACCCTAACAGGCCAATCGCCAGCTTCATTTTTTCTGGGCCTACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCATTGGCTACATACTACTTTGGATCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACAGTCTCGAAACTCATTGGTTCACCTCCTGGATATGTTGGTTACACCGAGGGTGGTCAACTGACTGAGGCAGTTCGTCGTCGTCCCTACACAGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCCGACGTCTTCAACATGATGCTTCAAATCCTGGAAGATGGAAGGCTAACAGATAGCAAGGGAAGAACCGTGGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTTATTGAGAAAGGAGGCCGTCGTATAGGATTTGACCTTGACTATGATGAGAAGGATAGCAGTTATAATCGAATCAAGAGCTTGGTGACTGAGGAGCTGAAGCAATACTTCAGGCCAGAGTTTTTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAATTAACAAAACTTGAGGTAAAGGAGATAGCTGATATAATGCTGAAGGAGGTGTTTGAGAGACTGAAAGCCAAAGATATTGAGTTGTCAGTGACAGAGAGATTTAAGGAGAGAGTGGTCGACGAAGGTTATAATCCTAGTTATGGTGCCAGGCCTCTAAGAAGAGCCATAATGAGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTCGCTAGAGAGATTAAAGAGGGTGATTCtgtcatagtggatgctgattctgatggtaatgtgattgtgCTCAATGGCAGTAGTGGTGCTTCAGATTCATTGCCAGAGGCTCTTCCTGTTTAA | 2781 | 0.3786 | MSRLLVHSLNVPGLVPGQRHGNNNKVLAKVRRPVKMMFATGTAASRMPGFSGLRTVNSLDSMLRPRLDFHSKVLTQIGTNRARSGRGNRVVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGEGADNVGATVGSGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEAKELEKEVRKIVKEKDQAVRNQEFEKAGELRDQEMDLKAQISAVVEKGKEMSKAESEAGDIGALVTEVDIQHIVAAWTGIPVDKVSTDESDRLLKMEDTLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKAKDIELSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGASDSLPEALPV | 926 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g00589 | 926 | Pfam | Clp amino terminal domain, pathogenicity island component | 110 | 162 | IPR004176 | - | |
Car06g00589 | 926 | Pfam | Clp amino terminal domain, pathogenicity island component | 186 | 237 | IPR004176 | - | |
Car06g00589 | 926 | CDD | AAA | 613 | 761 | - | - | |
Car06g00589 | 926 | PANTHER | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC | 79 | 926 | - | - | |
Car06g00589 | 926 | SMART | ClpB_D2_small_2 | 819 | 909 | IPR019489 | - | |
Car06g00589 | 926 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 588 | 905 | IPR027417 | - | |
Car06g00589 | 926 | Gene3D | - | 246 | 439 | IPR027417 | - | |
Car06g00589 | 926 | Gene3D | - | 95 | 242 | IPR036628 | - | |
Car06g00589 | 926 | PRINTS | ATP-dependent Clp protease ATP-binding subunit signature | 643 | 661 | IPR001270 | GO:0005524 | |
Car06g00589 | 926 | PRINTS | ATP-dependent Clp protease ATP-binding subunit signature | 688 | 706 | IPR001270 | GO:0005524 | |
Car06g00589 | 926 | PRINTS | ATP-dependent Clp protease ATP-binding subunit signature | 717 | 735 | IPR001270 | GO:0005524 | |
Car06g00589 | 926 | PRINTS | ATP-dependent Clp protease ATP-binding subunit signature | 750 | 764 | IPR001270 | GO:0005524 | |
Car06g00589 | 926 | Coils | Coil | 502 | 529 | - | - | |
Car06g00589 | 926 | ProSitePatterns | Chaperonins clpA/B signature 2. | 673 | 691 | IPR028299 | - | |
Car06g00589 | 926 | Pfam | AAA domain (Cdc48 subfamily) | 638 | 812 | IPR003959 | GO:0005524|GO:0016887 | |
Car06g00589 | 926 | Gene3D | UVR domain | 505 | 563 | - | - | |
Car06g00589 | 926 | PANTHER | ATP-DEPENDENT CLP PROTEASE | 79 | 926 | - | - | |
Car06g00589 | 926 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 256 | 533 | IPR027417 | - | |
Car06g00589 | 926 | Gene3D | - | 441 | 585 | - | - | |
Car06g00589 | 926 | ProSiteProfiles | Clp repeat (R) domain profile. | 96 | 238 | IPR004176 | - | |
Car06g00589 | 926 | Coils | Coil | 350 | 370 | - | - | |
Car06g00589 | 926 | Gene3D | - | 819 | 918 | - | - | |
Car06g00589 | 926 | ProSiteProfiles | UVR domain profile. | 513 | 548 | IPR001943 | GO:0005515 | |
Car06g00589 | 926 | Pfam | ATPase family associated with various cellular activities (AAA) | 301 | 417 | IPR003959 | GO:0005524|GO:0016887 | |
Car06g00589 | 926 | Pfam | AAA lid domain | 439 | 541 | IPR041546 | - | |
Car06g00589 | 926 | ProSitePatterns | Chaperonins clpA/B signature 1. | 391 | 403 | IPR018368 | GO:0005524 | |
Car06g00589 | 926 | SMART | AAA_5 | 296 | 436 | IPR003593 | - | |
Car06g00589 | 926 | SMART | AAA_5 | 639 | 820 | IPR003593 | - | |
Car06g00589 | 926 | SUPERFAMILY | Double Clp-N motif | 97 | 237 | IPR036628 | - | |
Car06g00589 | 926 | CDD | AAA | 279 | 431 | - | - | |
Car06g00589 | 926 | Pfam | C-terminal, D2-small domain, of ClpB protein | 819 | 899 | IPR019489 | - | |
Car06g00589 | 926 | Gene3D | - | 591 | 817 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car06g00589 | Car-Chr6 | 5951443 | 5957158 | Dispersed/Wgd |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g00589 | K03696 | - | gmx:100796195 | 1611.66 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Car06g00589 | 06 | 5951443 | 5957158 | Car05g02602 | 05 | 71045114 | 71052277 | PCT |