Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00583 ATGGCAGCTTTTCCATATCAATACCAACAACAACCCTTTATTGTTGACTCTGCATACTTCACCAATATTAACATCTCTTCAATTGATCAACCACTTCATATTATAAACACTTCTCTTCCTTTTCTTAGTGTTATTAATCATGAAACTAGTTGTCTTCATCAAAACTCTAACAATAGTTTGAGTGATCACAACAATCCAAGCCCTCAGAGTTCCATGGTTGTGGATAAGCTTGAAAAAGGTGAACAAGTCACTCAGAAAGTTAGTTCTATGGAAAACAAGAAAAGAATCAGAAATAAGTCTTCTTTGAGTAGCCCTTTATCCAAGGACTCaatagaaggtagaagcaaaaaacaaaagaagagtagtggtgagggaatgaaaagagaagacaagaaaaaagaagagaagaaggatcaaaagaaaaTTCTTGAAGAACCTCCAACTGGTTATATACATGTAAGAGCAAGAAGGGGTCAGGCAACAGATAGTCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGATAGGATGAAGATATTGCAGCAACTTGTACCAGGCTGTGATAAGGTAAATGGAAAAGCCCTTGTGTTGGATGAAATAATCAATTATGTACAGTCCTTACAGAATCAAGTTGAGTTCTTGTCAATGAAACTTGCTTCAGTGAATCCAATCTTCTTTGACTTGGCAATAGATCTAGATCATCAGAGCTTAAATAGCATAACATCACAaccatcaccatcaacaacaccactaccatcattaccattaAGCAACTCCAACCATGCCACACCTTTTGCTGACACAATTACGACAACCTTCCACCATGTTAATAATGACTATCTTTTGGAATATCCAAATCCAATGTTTCTTCAAGGACAAAGGTCAAATACCATCTTTGAGCAAAATGGTGGACCATTTTGGGACGCAGAAGAGCAACGACAAAAGCATCTTAATCCATATGGATTTGGCAACAATACATGTTCCTTAAATTAA 999 0.3203 MAAFPYQYQQQPFIVDSAYFTNINISSIDQPLHIINTSLPFLSVINHETSCLHQNSNNSLSDHNNPSPQSSMVVDKLEKGEQVTQKVSSMENKKRIRNKSSLSSPLSKDSIEGRSKKQKKSSGEGMKREDKKKEEKKDQKKILEEPPTGYIHVRARRGQATDSHSLAERVRREKISDRMKILQQLVPGCDKVNGKALVLDEIINYVQSLQNQVEFLSMKLASVNPIFFDLAIDLDHQSLNSITSQPSPSTTPLPSLPLSNSNHATPFADTITTTFHHVNNDYLLEYPNPMFLQGQRSNTIFEQNGGPFWDAEEQRQKHLNPYGFGNNTCSLN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00583 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 224 IPR036638 GO:0046983
Car06g00583 332 Gene3D - 156 225 IPR036638 GO:0046983
Car06g00583 332 MobiDBLite consensus disorder prediction 242 261 - -
Car06g00583 332 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 332 - -
Car06g00583 332 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 332 IPR024097 GO:0006355
Car06g00583 332 MobiDBLite consensus disorder prediction 55 167 - -
Car06g00583 332 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Car06g00583 332 SMART finulus 165 215 IPR011598 GO:0046983
Car06g00583 332 MobiDBLite consensus disorder prediction 110 167 - -
Car06g00583 332 CDD bHLH_AtBPE_like 149 225 - -
Car06g00583 332 MobiDBLite consensus disorder prediction 55 72 - -
Car06g00583 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00583 Car-Chr6 5903808 5906860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00583 1 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.681 1.03e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g00583 HLH 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00583 - - gmx:100806696 339.732