Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00579 ATGGGTTGCGGTCTCGGAAAACCTGCCGGTGCCGGAGCTGGTCACTCTCGCCGAGATAACACCGCTACTGTTGACGGAGCTAATAATGTCGTTAAGGTTCGGGAGAAGCAGGAAACTGAAGCTCCCAACGCCGGTGAACTTTCCGGCAATATTCCGGCGCCGAAGTTCCGGCAACTTCGACTCAATTCATTCACAGCGACCCAACAGAGTTGGCCGCCGTGGTTGATGGATGTTGCCGGTGATGCAATCCGAGATTGGACTCCTCGGCGCGCCAACACGTTTGAGAAGCTTTCTAAGATTGGGAAAGGAACTTATAGCAATGTGTACAAAGCTAGAGACCTTGTTACTGGAAAGATAGTGGCTTTGAAGAAAGTTAGAATTGATAATTTGGAAGCTGAGAGTGTGAAATTCATGGCTAGAGAGATTCTTGTTTTGAGGAAGCTTGATCACCCTAATGTTATAAAGCTTGAGGGATTGGTTACTTCGAGGATATCGTCGAGTCTTTACTTGGTATTTGAGTACATGGAACATGATCTTGCTGGTCTTATAGCTGGTCTTGGTGTCAAATTCTCTGAGCCTCAGGTAAAATGTTATATGAAGCAATTGTTGTCCGGCCTTGAGCATTGCCACAGCCAAGGCGTATTGCACCGTGATATCAAGGGGTCGAATCTGCTTATTGACAATGAAGGAATACTTAAAATTGCAGATTTTGGACTGGCAACTTTCTATAATCCTAAGCAAATTCATCCCATGACTAGCAGAGTCGTGACCCTTTGGTATCGTCCCCCCGAGCTTCTTCTTGGAGCTACATTCTACGGTGTTGGGGTCGATCTTTGGAGTGCCGGTTGCATCTTAGCAGAGCTTCTTGCTGGAAAGCCAATCATGCCTGCAAGAACAGAGGTTGAGCAACTGCACAAAATATTCAAGTTGTGTGGTTCTCCATCTGATGAATATTGGAGGAAATATAGATTGACAAATGCTACTCTCTTTAAGCCACAGCAACCGTATAAAAGGCGCATCTCAGAAACATTTGTGGATTTTCCATCTTCTTCATTACCTTTAATTGAAACTCTTCTTGCAATAGATCCCGACGATCGTGGCACTACCTTGTCTGCTCTAAATAGCGAAGTGAGTGATCGGTCACTGCATGCTTGCCATGCATTTGAGATGTAA 1173 0.4535 MGCGLGKPAGAGAGHSRRDNTATVDGANNVVKVREKQETEAPNAGELSGNIPAPKFRQLRLNSFTATQQSWPPWLMDVAGDAIRDWTPRRANTFEKLSKIGKGTYSNVYKARDLVTGKIVALKKVRIDNLEAESVKFMAREILVLRKLDHPNVIKLEGLVTSRISSSLYLVFEYMEHDLAGLIAGLGVKFSEPQVKCYMKQLLSGLEHCHSQGVLHRDIKGSNLLIDNEGILKIADFGLATFYNPKQIHPMTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCILAELLAGKPIMPARTEVEQLHKIFKLCGSPSDEYWRKYRLTNATLFKPQQPYKRRISETFVDFPSSSLPLIETLLAIDPDDRGTTLSALNSEVSDRSLHACHAFEM 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00579 390 Gene3D Transferase(Phosphotransferase) domain 1 177 387 - -
Car06g00579 390 PANTHER OS02G0559300 PROTEIN 58 386 - -
Car06g00579 390 CDD STKc_CDK9_like 94 376 - -
Car06g00579 390 ProSiteProfiles Protein kinase domain profile. 94 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00579 390 MobiDBLite consensus disorder prediction 1 28 - -
Car06g00579 390 Pfam Protein kinase domain 94 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00579 390 Gene3D Phosphorylase Kinase; domain 1 80 176 - -
Car06g00579 390 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Car06g00579 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Car06g00579 390 PANTHER CELL DIVISION PROTEIN KINASE 58 386 - -
Car06g00579 390 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00579 390 SUPERFAMILY Protein kinase-like (PK-like) 87 375 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00579 Car-Chr6 5851151 5855165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00579 86 376 Core Cell Cycle Gene Families AT5G10270 52.443 8.69e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Car06g00579 Pkinase 2.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00579 K08819 - gmx:100789359 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00579 06 5851151 5855165 Car06g00579 06 5851151 5855165 ECH