Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00577 ATGGAAAAATTGAATTTTATAAAAAATGGAGTGAGTAGATTGCCACCTGGTTTTCGTTTCCAACCAACAGATGAAGAGCTTGTTTTTCAGTATTTGAAATGTAAGATCTTCTCATGTCCCTTGCCTGCTTCCATCATTCCTGAGATCAATGTATGCAAGTATGATCCTTGGGATTTACCAGGAGGTTGTGATGAACAAGAGAGACACTTTTTCAGCTGGAAGGAAGCTAAATATCGAAATAGTAAACGCATGATGAGCAGAACAACCAAATGTGGGTATTGGAAGGCAACAGGGTCAGACAAAAAAATTTCATCACCAACTTGTAATGGCATTGTTGGCCTAAGAAAAACTCTTGTTTTCTATGAAGGAAAATCCCCAAATGGTTCTAGAACTGATTGGATCTTGCATGAATATCGTCTCATCAATGTAGATACTAGTCCTTGCAACTCAACCCAGAATTACTATGGAAATGAGATAGGAGATTGGGTTTTGTGTCGCTTATCAATGAGGAAAAAAAGTTTAGAAAGTGAATATGGAAGCACAAGTACTCATCATGCTCCTTCAAAATTAATGTTTGATTTTATGATGGTAAGTAACAAGACATGTTCTTCTACGTCCTCTTCATGTTCAAGTTCCAGTATTAACAACATCGAGGTCTCTTCAAATGCACCAGATCATCAACAAGATTATACTCATTTTTAA 702 0.3661 MEKLNFIKNGVSRLPPGFRFQPTDEELVFQYLKCKIFSCPLPASIIPEINVCKYDPWDLPGGCDEQERHFFSWKEAKYRNSKRMMSRTTKCGYWKATGSDKKISSPTCNGIVGLRKTLVFYEGKSPNGSRTDWILHEYRLINVDTSPCNSTQNYYGNEIGDWVLCRLSMRKKSLESEYGSTSTHHAPSKLMFDFMMVSNKTCSSTSSSCSSSSINNIEVSSNAPDHQQDYTHF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00577 233 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Car06g00577 233 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Car06g00577 233 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 233 - -
Car06g00577 233 SUPERFAMILY NAC domain 10 169 IPR036093 GO:0003677|GO:0006355
Car06g00577 233 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Car06g00577 233 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00577 Car-Chr6 5842921 5844443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00577 1 173 NAC Transcription Factor Family AT5G13180 59.538 8.58e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car06g00577 NAM 4.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00577 - - gmx:100803200 339.732