Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00560 ATGGATTGGAATTTGAAAGCACCTTCATGGGAATTAAGTGAAGTGGATCATGAAGCAAGCTTAAACAACAGCAACATAGAAACAATGAATGATGGCTCAACTAGGAGTACAAGTTTTGAAGTTTACAGAACAACAAAAGGGGAATTTTCTGTTGACTTGAAGCTTGGTCAAGTTGGACATTCTGGCACTGAATCAATGGTTACAAAATCCAAAGATGATGTTGTTGGAATTACTAAAATGACCTCTTCATCATCATCTTCAGGTTCATCTAAGAGAGCTAGAGCAATTAATAATGGTACTCAGATTGTGGCATGTCTTGTTGATGGTTGTCAAGCTGATCTAAGTAATTGTAGAGACTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCCAAAACTGCACAAGTCACAATTGGTGGCCACAAACAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGAAAGAGGAGCTGTAGGAAACGGTTAGATGGACACAACCGACGGAGAAGAAAGCCACAAGCAGAACCTATAACTCGATCTAGTAGCTTTTTGTCCAATTACCAAGGAACACAATTGCTACCATTCTCAAGTTCACATATCTACCCTTCTACTGCAATGATGAATCCAACTTGGAATGGAGGAGATGTTAGACTCCACAATCACAACCAACACCGACAAGACCTTTTTCTTGGAACTTCTCAAACCAACACCTACAAAGAAGGAAAACAAGTTGCATCATTCATACAAACTAATCATCACCACCCAACGACCACTCTCAACAACACAAACCAACACCTTCCAGAAGCTTCTTCCTTAAACCAAACATTTAGAAGAACAAACCCATTTTCAGACAAAATGTTCTGTGATAGTTTAACAAGTTCTGTTCacaacaacaacaacaacaCTTCTTGTGCTCTCTCTCTTCTGTCATCACCAACACAACAACAACAGACACATGATCACGTTAATGGATTGAATCAAATGGTGAATACTCACTCATCTTTTATGCAACCATTAGGACTAAGCTTGCATGATCATAGCTTGGACCCTGTTTTGGGTTCAAATGATGAAAGTGGTCATTGTTCCTCGATTTATAACATGGGTGGTTCTAATGAATCACATTCTACTCAGGGGAATAACAATGATGCACCTCCTTTGTTTCCATTTCAATGGGATTAG 1200 0.3867 MDWNLKAPSWELSEVDHEASLNNSNIETMNDGSTRSTSFEVYRTTKGEFSVDLKLGQVGHSGTESMVTKSKDDVVGITKMTSSSSSSGSSKRARAINNGTQIVACLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEPITRSSSFLSNYQGTQLLPFSSSHIYPSTAMMNPTWNGGDVRLHNHNQHRQDLFLGTSQTNTYKEGKQVASFIQTNHHHPTTTLNNTNQHLPEASSLNQTFRRTNPFSDKMFCDSLTSSVHNNNNNTSCALSLLSSPTQQQQTHDHVNGLNQMVNTHSSFMQPLGLSLHDHSLDPVLGSNDESGHCSSIYNMGGSNESHSTQGNNNDAPPLFPFQWD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00560 399 Gene3D - 96 166 IPR036893 GO:0003677|GO:0005634
Car06g00560 399 MobiDBLite consensus disorder prediction 369 399 - -
Car06g00560 399 SUPERFAMILY SBT domain 103 184 IPR036893 GO:0003677|GO:0005634
Car06g00560 399 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 24 399 - -
Car06g00560 399 MobiDBLite consensus disorder prediction 369 391 - -
Car06g00560 399 Pfam SBP domain 105 178 IPR004333 GO:0003677
Car06g00560 399 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 399 IPR044817 GO:0003677
Car06g00560 399 ProSiteProfiles Zinc finger SBP-type profile. 102 179 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00560 Car-Chr6 5617164 5621767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00560 1 218 SBP-box Gene Family AT5G50670 51.770 1.35e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car06g00560 SBP 2.2e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00560 06 5617164 5621767 Car05g02635 05 71371897 71375262 PCT