LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g00547	ATGTGGGGATGGATGATCATGGAAGGTCGAAAAGCATCTTACGAATTGACAGCATTTAACCTAAGACTCATCCGTAACATGGGAGGCGGTCCTCGTACATTCCCCGGCGGCGTAAGCAAATGGAAATGGAAACGAATGCACGAAAAACGCGCCGAAGAGAAACAACGAAAGCTTCTCGAACAAGAGAAACAACTCTACCAAGCACGCATTCGTTCACACATTCGTTCCACTCTCTCACCACCTTCTTCATCCTCTTCTTCCACTCATAACCCTATTTCCCCTCAAGAACACATCAAAGCCCTCGCCGATCGTTTCATGAAAGAAGGTGCTCAAGATCTTTGGAATGACCTCGACGGTCCAGTAGcccaaacccaaacccaaacccaaacacaagcccaaaTCTCACCGCAACATGATTTGCCCAAACTCGTACGCCAACCTTCCAATCGAAATTTGACTAATTATTCGCAAATTAGGGATTACCGCTCTTTTCCTGAGGTTAGGGATTTGACTAATTATTCGCAAATTAGGGCTTACTGTTCTGTTTCTAAGGTTAGGGGTTTGACTAATCGGAACCATGTTAGCAAAGAAAAGCCAGAAAAGCGTAGAATTTGGAGGAACAATGGTTCTTCAACTGAGAGTGAGAGTGAGGATGAAGTGGAATCTAAGAATCAGGGTTACTATTCCAATATGGGTAGTATTGCTTCTTTGGGTAAATATGATGTGAAGAGGGAGAGGAGAGTGATGCCTAAGCCTTATAACGATGAAACTGATTTTTCGGAGCAGGTTGAGTTGATTAAGTATGAGCTTAATAAGAAGAAGTTGAGTCAGAATGAGGATAATCAAGGAGACGAACAGAAGAACATTCTTAGCCAGACAAGATTTGACGAGTGCGCTATATCGCCATTGACAATCAAAGCACTTTCTTCAGCTGGTTACATTCATATGACCCGGGTTCAAGAGATTAGCCTCCCTATTTGCCTTGAGGGTGTGGATGTTATGGTCAAGGCTAAAACTGGCACTGGAAAAACTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTTTGAAAGCTATGAGTAGCAATACCTCTCACCGTGCACCACCAATATTTGTTCTTATTCTATGCCCTACCAGAGAACTTGCTAGTCAAATTGCTGCTGAAGCAAAGGTTTTGCTGAAATATCATGATGGCATTGGAGTGCAGACTCTAGTTGGAGGTGTACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGATCCATGCCAGATGCTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTTTACGATTGATGGGCATGCAGATGCTTGTACTTGACGAAGCTGATCATTTATTGGACCTTGGGTTTCGAAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGGCAAAGGCAATCCTTGCTGTTTTCTGCAACCATGCCAAAGGAGGTCCGTCGAATATCGCAACTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATGGGTTGCGTGGAAACTCCTGTTCAGGTGAAGCAAACTTATCTTATCGCTCCACATGAATCACACTTTCAAATAGTACATCATATTTTGAAAGAGCATATCTCGCAAACACCTGATTATAAGGTTATTGTTTTCTGTATAACTGGGATGGTGACATCACTCACATATCACCTTCTTCGAGAAATGAAACTGAATGTTAAGGAGATACATTCTCGAAAACCTCAGCTGTATCGGACTCGTGTATCAGATGAGTTTAAGGAATCCAAAGAAATGATTCTTGTCTCTTCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTTACTTTAGTCATACAGGTGGGAATTCCTTCAGACCGTGAACAATATATACATCGTCTTGGAAGAACAGGACGAGAAGGTAAAGATGGGGAAGGCATATTGTTGATTGCACCATGGGAAGAGTATTTTTTAAATGAGATCAAAGATCTCCCTCTAGAGAAATTCCCCTCACCAGATATAGATCCAAAGGAACAACTTAAGATTGAGCAATCCATGGCAAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCCTGGCTTGGTTATTATAACTCCATCAGGGAAATTGGGAGGGAAAAGACCACAGTAGCTGAGCTGGCAAACCGGTTTTCTGAATCAATTGGTTTACCAAGGCCGCCTTCTCTCTTTCGAAAAACTGCACTAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAG	2289	0.4098	MWGWMIMEGRKASYELTAFNLRLIRNMGGGPRTFPGGVSKWKWKRMHEKRAEEKQRKLLEQEKQLYQARIRSHIRSTLSPPSSSSSSTHNPISPQEHIKALADRFMKEGAQDLWNDLDGPVAQTQTQTQTQAQISPQHDLPKLVRQPSNRNLTNYSQIRDYRSFPEVRDLTNYSQIRAYCSVSKVRGLTNRNHVSKEKPEKRRIWRNNGSSTESESEDEVESKNQGYYSNMGSIASLGKYDVKRERRVMPKPYNDETDFSEQVELIKYELNKKKLSQNEDNQGDEQKNILSQTRFDECAISPLTIKALSSAGYIHMTRVQEISLPICLEGVDVMVKAKTGTGKTAAFLLPAIETVLKAMSSNTSHRAPPIFVLILCPTRELASQIAAEAKVLLKYHDGIGVQTLVGGVRFKVDQKRLESDPCQMLVATPGRLLDHIENKSGISLRLMGMQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATMPKEVRRISQLVLKREHKYVDTVGMGCVETPVQVKQTYLIAPHESHFQIVHHILKEHISQTPDYKVIVFCITGMVTSLTYHLLREMKLNVKEIHSRKPQLYRTRVSDEFKESKEMILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKDGEGILLIAPWEEYFLNEIKDLPLEKFPSPDIDPKEQLKIEQSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTVAELANRFSESIGLPRPPSLFRKTALKMGLKDIPGIRIRR	762

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g00547	762	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	370	664	IPR027417	-
	Car06g00547	762	Pfam	DEAD/DEAH box helicase	317	495	IPR011545	GO:0003676\|GO:0005524
	Car06g00547	762	Coils	Coil	44	71	-	-
	Car06g00547	762	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	541	693	IPR001650	-
	Car06g00547	762	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED	30	761	-	-
	Car06g00547	762	SMART	ultradead3	312	523	IPR014001	-
	Car06g00547	762	MobiDBLite	consensus disorder prediction	74	94	-	-
	Car06g00547	762	CDD	SF2_C_DEAD	522	655	-	-
	Car06g00547	762	MobiDBLite	consensus disorder prediction	191	222	-	-
	Car06g00547	762	Gene3D	-	517	738	IPR027417	-
	Car06g00547	762	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	293	321	IPR014014	GO:0003724
	Car06g00547	762	MobiDBLite	consensus disorder prediction	191	224	-	-
	Car06g00547	762	Gene3D	-	257	508	IPR027417	-
	Car06g00547	762	MobiDBLite	consensus disorder prediction	123	150	-	-
	Car06g00547	762	PANTHER	RNA HELICASE	30	761	-	-
	Car06g00547	762	SMART	helicmild6	565	646	IPR001650	-
	Car06g00547	762	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	324	507	IPR014001	-
	Car06g00547	762	Pfam	Helicase conserved C-terminal domain	540	645	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g00547	Car-Chr6	5531330	5535696	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g00547	293	671	Eukaryotic Initiation Factors Gene Family	AT3G19760	27.778	1.24e-40	152

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g00547	-		-	lang:109349967	1095.88