Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g00544 | ATGTCGTTCAGCGGAACCCAACAGAAATGCAAGGCTTGTGATAAAACTGTTCATTTGGTTGATACATTATCTGCTGATGGTAATATTTATCACAAGAATTGCTTCAGATGTAGTCAGTGCAATGGCCTTCTCGCGATGAGTAACTATTCATCGCTGGAAGGAGTTTTATACTGCAAGACTCACTCTGAGCAGCTTTTCAAAGAATCTGGCAATTTTGCAGCAAAGATATCCCAGTCAGGAGGAAAGCCTCCAAGCGAGCTGCCTAGGGCCCCAAGCAAACTTTCAGCTTTCTTCTCAGGGACTCAAGAAAAATGTTCATCATGCAAGAAAACTGTATATCCATTGGAAAAGTTGACAGTGGAAGGTGAATTTTACCACAAATCATGCTTTAGGTGTACACATGGAGGATGTTTCCTAAGCCCTTCATCCTATGCTGCTCTTGATGGATACATATACTGCAAGCCTCACTTTTCTCAGTTGTTCAAGGCAAAAGGTAGCTACAGTTATCTCTCCAAGCAAGCATCAATGAAGAAAAATGAAGAAATGAAACAAGGTGCAGAGAAAACTGATGAGTcagcagcagcagcagcaacatcagACACAGAGACAGGTACAAAGGAAGAACAAGATGCTGTTGTGACACAAGAGGATTAG | 654 | 0.3991 | MSFSGTQQKCKACDKTVHLVDTLSADGNIYHKNCFRCSQCNGLLAMSNYSSLEGVLYCKTHSEQLFKESGNFAAKISQSGGKPPSELPRAPSKLSAFFSGTQEKCSSCKKTVYPLEKLTVEGEFYHKSCFRCTHGGCFLSPSSYAALDGYIYCKPHFSQLFKAKGSYSYLSKQASMKKNEEMKQGAEKTDESAAAAATSDTETGTKEEQDAVVTQED | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g00544 | 217 | ProSiteProfiles | LIM domain profile. | 103 | 163 | IPR001781 | - | |
| Car06g00544 | 217 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Car06g00544 | 217 | Gene3D | Cysteine Rich Protein | 99 | 169 | - | - | |
| Car06g00544 | 217 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 212 | - | - | |
| Car06g00544 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 131 | 169 | - | - | |
| Car06g00544 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 73 | - | - | |
| Car06g00544 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Car06g00544 | 217 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Car06g00544 | 217 | MobiDBLite | consensus disorder prediction | 203 | 217 | - | - | |
| Car06g00544 | 217 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Car06g00544 | 217 | SMART | lim_4 | 104 | 156 | IPR001781 | - | |
| Car06g00544 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 97 | 130 | - | - | |
| Car06g00544 | 217 | Pfam | LIM domain | 105 | 160 | IPR001781 | - | |
| Car06g00544 | 217 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Car06g00544 | 217 | PANTHER | OS06G0237300 PROTEIN | 1 | 212 | IPR045268 | GO:0051015 | |
| Car06g00544 | 217 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Car06g00544 | 217 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Car06g00544 | 217 | MobiDBLite | consensus disorder prediction | 178 | 217 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car06g00544 | Car-Chr6 | 5516139 | 5518224 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Car06g00544 | LIM | 4.5e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g00544 | - | K24413 | gmx:100499865 | 333.569 |