Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00540 ATGAAGTTTTTTACTTCATTGTTGTTTCTGAGTTTGGTTTCTATGTTCCCCTTTGTGGTTTTTGGCATGGTGGTTTCAAATGAAGTTTGGGCACTTAAAACCTTCAAAGAAGCTGTGTATGATGATCCACATATGGTTTTATCCAATTGGAATACTCTTGATTCAGATCCTTGTGACTGGAATGGAGTTTTGTGCTCTGCGACTCGAGATCATGTCATCAAGCTAAACATATCAGGAGCATTGCTAAGAGGATTTCTTGCTCCAGAAATTGGAAAAATTGCCTACTTGCAAGAACTGATCTTGCATGGAAACAATCTCATTGGAATAATACCGAAAGAATTAAGCGCGTTAAAGTCTCTTAAGGTGTTGGATTTGGGAAAAAATCAGTTATCAGGACCAATTCCTAAAGAGATTGGAAATTTGACTCAAATTGTAAAAATAAATTTGCAGTCCAATGGTTTGACTGGTAGGTTACCTTCTGAGCTTGCAAATTTGAAATACCTTCAAGAACTTCGGTTAGATAGGAATAAGCTTGAAGGACCTGTTCCTGCTTCTAGCAGTTCAAATTTTTCTTCAAATATGCATGAAATGTATGCCTCAAATAAGAATTCAACTGGCTTCTGTCGTTCGTCACTTAAAGTTGCAGATTTTTCATATAACTTTTTGGTTGGTAGCATACCGAAATGCTTGGAGTATCTTCCAAGAACTAGCTTTCAAGGGAATTGCCTCCATGTCAAAGAAATAAAACAGCGGACTAAAGTTCAATGTGCTGGAGCTTCGCCTGCCCAAGGTCATCCAGTAGTGAAACCACCGAAACGCCAATCTAAAGCTGAACATGTTTCAAAGCATCAAGGATCTTCAAAACCTGCTTGGCTTTTGGCTATCGAAATAGCGACCGGAACCATGGTTGGTTCTCTCTTTCTAATCGGTATTCTCACTGCTATCCAAAGGTGTAACAACAAATCATCCATCATTATTCCTTGGAAGAAATCTGCAAGCGAGAAAGAGCAAATGACGGTATTTGTAGACTCCGAGATGTTGAAAGATGTGATGAGATACAGCAGACAGGAGCTTGAGGTGGCCTGTGAAGACTTCAGCAACATAATTGGATCCTCGCCTGATAGTATCGTCTACAAGGGTATAATGAAAGGTGGACCTGAGATTGCTGTAATTTCACTCTGCATCAAGGAAGAGAATTGGACTGGACACCTTGAACTTTATTTTCAAAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGTGAATACAGGAAAGCTATTAGGCTATTGTAGAGAGAGCAATCCATTTACAAGGATGCTGGTTTTTGATTATGCATCAAATGGAACACTATATGAGCACCTGCATTGTTATGAAGAAGGGTGCCAATTATCTTGGACACGGCGCATGAAAATCATCATAGGCATCGCTCGAGGACTAAAGTATTTGCACACTGAAATTGAACCTCCATTCACTATCTCAGAGTTGAATTCAAATGCTGTATACCTTACAGATGATTTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTGGAAAGATCAGAAAAAAATTCTGGTTGTGTTAGCAGCCAAGGTGCTGTTTGTATTCTTCCAAACTCCCTTCAAGCACGCTATCTCGATACCAAAGGAAACATTTATGCTTTTGCAGTACTTCTACTGGAGATTATCAGTGGAAGATCTCCATACTGCAAGGACAAAGGTTACTTAGTAGATTGGGCCAGGGATTATCTTGAGATGCCAGAAGTAATGTCATATGTGGTGGATCCTGAGTTGAAACATTTTGGATATGATGACCTCAAAGTAATATGTGAGGTAATAACACTTTGTATTAGTCCTGACTCCAGTGTCTGTCCATCGATGCGAGAATTGTGCAGCATGCTGGAGAGCAGAATCGACACATCGATAAGTGTGGAGCTCAAGTCATCATCTTTAGCTTGGGCTGAACTAGCACTTTCATCATAA 1989 0.3977 MKFFTSLLFLSLVSMFPFVVFGMVVSNEVWALKTFKEAVYDDPHMVLSNWNTLDSDPCDWNGVLCSATRDHVIKLNISGALLRGFLAPEIGKIAYLQELILHGNNLIGIIPKELSALKSLKVLDLGKNQLSGPIPKEIGNLTQIVKINLQSNGLTGRLPSELANLKYLQELRLDRNKLEGPVPASSSSNFSSNMHEMYASNKNSTGFCRSSLKVADFSYNFLVGSIPKCLEYLPRTSFQGNCLHVKEIKQRTKVQCAGASPAQGHPVVKPPKRQSKAEHVSKHQGSSKPAWLLAIEIATGTMVGSLFLIGILTAIQRCNNKSSIIIPWKKSASEKEQMTVFVDSEMLKDVMRYSRQELEVACEDFSNIIGSSPDSIVYKGIMKGGPEIAVISLCIKEENWTGHLELYFQREVADLARLNHVNTGKLLGYCRESNPFTRMLVFDYASNGTLYEHLHCYEEGCQLSWTRRMKIIIGIARGLKYLHTEIEPPFTISELNSNAVYLTDDFSPKLVDFESWKTILERSEKNSGCVSSQGAVCILPNSLQARYLDTKGNIYAFAVLLLEIISGRSPYCKDKGYLVDWARDYLEMPEVMSYVVDPELKHFGYDDLKVICEVITLCISPDSSVCPSMRELCSMLESRIDTSISVELKSSSLAWAELALSS 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00540 662 ProSiteProfiles Protein kinase domain profile. 363 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00540 662 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Car06g00540 662 PANTHER PROTEIN MALE DISCOVERER 2 7 662 - -
Car06g00540 662 Pfam Protein tyrosine and serine/threonine kinase 367 573 IPR001245 GO:0004672|GO:0006468
Car06g00540 662 SUPERFAMILY L domain-like 26 234 - -
Car06g00540 662 Gene3D Ribonuclease Inhibitor 24 255 IPR032675 -
Car06g00540 662 Gene3D Transferase(Phosphotransferase) domain 1 445 652 - -
Car06g00540 662 Pfam Leucine rich repeat 96 154 IPR001611 GO:0005515
Car06g00540 662 MobiDBLite consensus disorder prediction 258 283 - -
Car06g00540 662 Gene3D Phosphorylase Kinase; domain 1 325 444 - -
Car06g00540 662 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 662 - -
Car06g00540 662 SUPERFAMILY Protein kinase-like (PK-like) 341 637 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00540 Car-Chr6 5460135 5464738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00540 25 637 Receptor kinase-like Gene Family AT2G01210 26.961 5.94e-54 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Car06g00540 PK_Tyr_Ser-Thr 4.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00540 - - gmx:100779744 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00540 06 5460135 5464738 Car06g00540 06 5460135 5464738 ECH
Car08g00228 08 1810926 1816125 Car06g00540 06 5460135 5464738 PCT