Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00533 ATGGATGGGAGAGAGGCTATGGCATTCTCTGGTGGTTCTGCTTCATATTACATGCATAGAGGAGGGGTTGGTGTTGGAGGGTCTAGCTCTGGAGTTTTCCAAGCACCTCCTGGGTTTAGAGCTTTGTCAAACACTGGCATTATAGCTCAACCAAATGATAGGGGTCAAGGTGGTAGTACAGTTGACTCTAGCTCCATATTTTCGTTGGAAACTCAGTCTCATCATGGTAATTTTAATCATGGCATTAGCATTGGGGCCTCTTCTGGGGCACCTTTAAGTGAGCCTGTGAAAAAGAAAAGAGGGAGGCCTCGGAAATACGGTCCTGGTGGATCGGTTTCTTTGAAACTGTCTCCAATGTCTGCACCTGTTAATTCTATGTCACAGGGTTCAACTACGCCTTCTGAGAAACGGGGTAGAGGACGGCCTCGTGGATCTGGAAGGAAGCAACAGCTAGCTGCATTAGGTATATTTGTGTGGTTGGCTTTTTCGCCTCATGTCATCACCGTTGGAGTTGGGGAGGACATTGTAGCCAAGCTATTGTCGTTAGCACAGCAGAGACCAAGGGCTCTGTGCATCATGTCGGGCACTGGGATAGTGTCTTCAGTTACTCTGCGACAGCCTGCTTCTACCAATGCTGGTGTTACTTATGAGGGTAAATTGCAAATATTATGCTTGTCTGGTTCTTATTTGGTTGCTGAAGATGGTGGACCATCCAACAGAACAGGTGGCGTAAGTGTTTCTCTTTCTACTCGTGACGGTCATGTTATCGGTGGCAGTGTTGCGGTGCTTATTGCTGGAAGCCCAGTGCAGGTGGTGGTGTGCAGCTTTGTATATGGCGGTGGATCGAAGGTAAAGACTAAGCAAGAGACCACTACCAAAGATGATAGTTCTGAGCCTCATAATGATAATAAGCTAGCTTCTCCAGTCAGTGTTCCACCTGGTCAAAACTACATCTCTTCTCCAACAGCCATGTGGCCCGGATCACAACTGTCAGACGTGAAAAGCCCGCACACACATACTGGCATTGACTTGACACGAGGGTGA 1044 0.478 MDGREAMAFSGGSASYYMHRGGVGVGGSSSGVFQAPPGFRALSNTGIIAQPNDRGQGGSTVDSSSIFSLETQSHHGNFNHGISIGASSGAPLSEPVKKKRGRPRKYGPGGSVSLKLSPMSAPVNSMSQGSTTPSEKRGRGRPRGSGRKQQLAALGIFVWLAFSPHVITVGVGEDIVAKLLSLAQQRPRALCIMSGTGIVSSVTLRQPASTNAGVTYEGKLQILCLSGSYLVAEDGGPSNRTGGVSVSLSTRDGHVIGGSVAVLIAGSPVQVVVCSFVYGGGSKVKTKQETTTKDDSSEPHNDNKLASPVSVPPGQNYISSPTAMWPGSQLSDVKSPHTHTGIDLTRG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00533 347 MobiDBLite consensus disorder prediction 302 338 - -
Car06g00533 347 CDD DUF296 164 276 IPR005175 -
Car06g00533 347 MobiDBLite consensus disorder prediction 117 135 - -
Car06g00533 347 Gene3D - 164 295 - -
Car06g00533 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Car06g00533 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 347 IPR039605 GO:0003680
Car06g00533 347 MobiDBLite consensus disorder prediction 287 301 - -
Car06g00533 347 MobiDBLite consensus disorder prediction 285 347 - -
Car06g00533 347 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 347 - -
Car06g00533 347 ProSiteProfiles PPC domain profile profile. 158 298 IPR005175 -
Car06g00533 347 MobiDBLite consensus disorder prediction 78 146 - -
Car06g00533 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00533 Car-Chr6 5426605 5429761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00533 1 347 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 45.501 3.33e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00533 - - gmx:100813888 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00533 06 5426605 5429761 Car06g00533 06 5426605 5429761 ECH
Car08g00224 08 1776355 1779795 Car06g00533 06 5426605 5429761 PCT