Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00524 ATGATACAAGCTCTAAAACTTATCCTCTTTCTTTGGTTTTGTTCCATAAACACACTTGTGACACTTGTCTTCGCTCATGCTCAGAGTGCATCTATTCAGACAGTGGTGTGCTTTCCTTTTATGAAAGGCGTTATTGAGCTAGGCACAACTGATCTGGTATTGGAAGATCTCAGTCTCATTCAACAGATCAAAACTTCTTTCTTGAATATTCTAAATGTCGATGATCCTAGTAACACTGAAACTATACCGAACACGAGAAATAACGAAGGCGTTGCTTGTGAAGCATTTGATCATAACGATTTTAATGTTGAATTAATTCCAGAAGTTGAATATGACATAATCAACAACACAACAACCTCTCCTAATGGAAGTTCAAACGCACTAGACATCAATCAACTACTCGATGAAACATTCATGGTTGAAAGTATAAACCATCGAACCTCTCAAGTCCAAAGCTGGCAAGTTATAGATGATGATTTGAGCAACTGTGTTCATAATAACTCCATGAATTCAAGTGACTGCATATCACAAACTTTTGCCAGTCCTCAGAAGATTAATGCTTCTGCTGATCCTAAAGGTGGAGAAGATTGCAATAACCAAAAAATGACCTTAGTTGATCCTCTAACTGATGATTGGCATTATCAGGGAATTCTTTCTACACTTTTGAAAAGCGCTGACCAGTTAATTATGGGGGTGCATTTTCAAAACTTTCATCAGGAATCAAGCTTTTGTGTTTGGAACAAAGGAGGGACAGTGGATTGTCATAGGCCAAGACAAGGAACCTCACAAAAGTTATTGAAGAAGATCTTGTTTGAAGTTCCTAGGATGCACATGGATGGATTGCTTGAATCTCAAGAAGAGAATGACTATAGAGAAGGAACAAGATTAGAGGCTGATGAAGGCATGAACCATGTTATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCCATACTAGATGATGCAATTGAATACCTTAGAAAGCTTGAGAAAAGGATAAAAGAGTTAGAAGCTCAAAGAGATCCAATAGATATAGAGTCTAGAAGTAAAAAATCAACTCATGATATGGTGGAGAGGACTTCTGATCAATATTATAACAAAACTAACAATATCAAGAAACCAATTGTAAAAAAGAGGAAAGTTTGTGACATAGAGGAGACAAGGAGAGAGGTTTGTTTAAAAGGAAGTTCTACTAGTGTCAATATGAGTGACAATAGAGTTGTGATTGAAATGAAGTGTCCTTCTAGACCAGGAAGGATATTGGAAATTATGGAAGTAGTTAACAAACTCAACATAGATTTTGATTCAGTTCAATCAACAGAAGCTGATGGAAGTATTCATCTGATCATTAAATCTAAGTTTACAGGACCATCTAATGCAACAACAAAAAAGATCAAACAAGCCCTCCAAAAAGTGGTTTCAAAGTCTTGA 1488 0.3622 MIQALKLILFLWFCSINTLVTLVFAHAQSASIQTVVCFPFMKGVIELGTTDLVLEDLSLIQQIKTSFLNILNVDDPSNTETIPNTRNNEGVACEAFDHNDFNVELIPEVEYDIINNTTTSPNGSSNALDINQLLDETFMVESINHRTSQVQSWQVIDDDLSNCVHNNSMNSSDCISQTFASPQKINASADPKGGEDCNNQKMTLVDPLTDDWHYQGILSTLLKSADQLIMGVHFQNFHQESSFCVWNKGGTVDCHRPRQGTSQKLLKKILFEVPRMHMDGLLESQEENDYREGTRLEADEGMNHVMSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKRIKELEAQRDPIDIESRSKKSTHDMVERTSDQYYNKTNNIKKPIVKKRKVCDIEETRREVCLKGSSTSVNMSDNRVVIEMKCPSRPGRILEIMEVVNKLNIDFDSVQSTEADGSIHLIIKSKFTGPSNATTKKIKQALQKVVSKS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00524 495 Coils Coil 338 365 - -
Car06g00524 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Car06g00524 495 PANTHER TRANSCRIPTION FACTOR EGL1 25 491 - -
Car06g00524 495 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 67 IPR025610 -
Car06g00524 495 SMART finulus 305 354 IPR011598 GO:0046983
Car06g00524 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 362 IPR036638 GO:0046983
Car06g00524 495 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
Car06g00524 495 PANTHER TRANSCRIPTION FACTOR TT8 25 491 - -
Car06g00524 495 Gene3D - 294 363 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00524 Car-Chr6 5333136 5336564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00524 11 492 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 38.996 2.57e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g00524 HLH 7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00524 - - lja:Lj4g3v2963430.1 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00524 06 5333136 5336564 Car06g00524 06 5333136 5336564 ECH