Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00506 ATGTCTTCTGATCTCTATTCTTTTGGCACCACTTTCCAAACACAATATTCAACCTCACAAAATGAAGAGCTTCCATTTTTCTCTGATTCATTCCCCTTTTTCAGCAACAACTCTAATGCTGAAGTAACTTCTCAACAAAATTCAAACTCATTTGATGAACCTCTTCCTAATTCTCTACACCCTTTTTCCTCTTCTTTCTTCTCTTTCTCTCCTCCTCTTACTGAAAATCTCACCACTTCTAATGAAAATTTATCAGCTTTTGAAGTTAAAAATGAGAAATCCCAAATGGGTGTAGTTGATTATTATAATATTAATAATATTCAATATCTTCCTCATAGTTATAGTGGTGTTGAGAATGTATCTAAGTACATGCAAAGAAGCTATAGTAGTAATTCTTTTGAAGGAAAGAAGCATAATTTTGTATTCCAAACTCACCATGATAATGTTGTGGATTCTCCAATTATTCAAACGCATGATCGAAACTCCCCTGAAAACAATTCATTCGTTGGACAAATTAGAAGGGTGTGTAGCACAGGTGATTTGCAGAAGATGAAAGCAAATGATATGTGTCGAAGGGAGGGAGAGGAAGCAAACTTAAAAGTAGGACGTTACAGTGCCGAAGAAAGAAAAGAAAGAATTTCCAAATACAAAGCAAAGAGAACTCAGAGGAACTTTAACAAGACCATTAAGTATGCATGCCGAAAGACACTGGCAGACAATAGACCACGCGTACGTGGCAGGTTCGCACGCAATGACGAGTACAATGAGATCCCTAAGCCTTCATGTTTAACCACAGATGAAGAACAAGTCGATTTTTGGATGGAAGAATTGCACTTGACCGAAGGAGCTTTAACTGACCAATATATCAACACCACTTACGGACCTACTCACTTTCAGTACTTTGGTTTTTGA 912 0.3695 MSSDLYSFGTTFQTQYSTSQNEELPFFSDSFPFFSNNSNAEVTSQQNSNSFDEPLPNSLHPFSSSFFSFSPPLTENLTTSNENLSAFEVKNEKSQMGVVDYYNINNIQYLPHSYSGVENVSKYMQRSYSSNSFEGKKHNFVFQTHHDNVVDSPIIQTHDRNSPENNSFVGQIRRVCSTGDLQKMKANDMCRREGEEANLKVGRYSAEERKERISKYKAKRTQRNFNKTIKYACRKTLADNRPRVRGRFARNDEYNEIPKPSCLTTDEEQVDFWMEELHLTEGALTDQYINTTYGPTHFQYFGF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00506 303 Pfam CCT motif 209 251 IPR010402 GO:0005515
Car06g00506 303 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 23 300 IPR045281 GO:0009909
Car06g00506 303 ProSiteProfiles CCT domain profile. 209 251 IPR010402 GO:0005515
Car06g00506 303 PANTHER CCT MOTIF FAMILY PROTEIN 23 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00506 Car-Chr6 5133100 5134592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00506 205 256 C2C2-CO-like Transcription Factor Family AT5G24930 48.077 2.15e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car06g00506 CCT 4.7e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00506 - - adu:107479916 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00506 06 5133100 5134592 Car06g00506 06 5133100 5134592 ECH
Car08g00215 08 1685487 1687046 Car06g00506 06 5133100 5134592 PCT