Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00504 ATGGGTTTTCCAGTAGGATACACAGAACTTCTCTTTCCAAAACTAGTTCTTCACCTTCTCTCCGTCTTTAGTTTCATACGAAAACTCATTTGCGCCATTTTTCGCTTTCTGGGTCTCCACGATTTCCTCGAACCCGACATTACATGGCCCGATGGGTCAACCCGAATACCCGAATTCGAATCCGTTTCAGCTCTTCTTATCCGAGAAATCCTCCCCGTTGTTAAGTTCATGGAATTGGTGGACCCACCCGAAAGTTGCGCCGTGTGTCTTACCGAGTTCGAGGAAAATGATGAGATCAGACGGTTAGCGAATTGTCGACACATTTTTCATCGATGTTGTTTGGACCGTTGGATGGGGTACGATCAGAGAACGTGTCCGTTATGTAGAACGCCTTTTATACCTGATGATATGCAAAGTGCTTTTAATGAGAGACTTTGGGCTGCTTCTGGGATCCCTGAATTTCACTCTGATCTTTCTTCTTTCTAA 486 0.4486 MGFPVGYTELLFPKLVLHLLSVFSFIRKLICAIFRFLGLHDFLEPDITWPDGSTRIPEFESVSALLIREILPVVKFMELVDPPESCAVCLTEFEENDEIRRLANCRHIFHRCCLDRWMGYDQRTCPLCRTPFIPDDMQSAFNERLWAASGIPEFHSDLSSF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00504 161 Pfam Ring finger domain 85 129 IPR001841 -
Car06g00504 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 136 IPR013083 -
Car06g00504 161 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Car06g00504 161 SMART ring_2 86 128 IPR001841 -
Car06g00504 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 158 - -
Car06g00504 161 SUPERFAMILY RING/U-box 71 135 - -
Car06g00504 161 PANTHER BRH1 RING FINGER PROTEIN 1 158 - -
Car06g00504 161 CDD RING-H2 86 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00504 Car-Chr6 5110062 5110885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00504 1 150 C3H Transcription Factor Family AT1G63840 58.065 4.37e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00504 K16281 - jre:109014495 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00504 06 5110062 5110885 Car06g00504 06 5110062 5110885 ECH
Car08g00214 08 1682223 1682836 Car06g00504 06 5110062 5110885 PCT