Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00497 ATGGGACATCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGTCTTTGGTCCCCTGAAGAAGATGATAAACTCATCACTTATATCACCTCTCATGGCTATGGCTGTTGGAGTGAAGTTCCTGAAAAAGCTGGGCTTCAAAGGTGTGGTAAGAGCTGTAGGTTGAGATGGATAAATTATTTGAGACCTGATATTAGAAGAGGAAGGTTTACACCTGATGAGGAGAAGTTAATTATAACCCTTCACAGTGTTGTTGGCAACAGATGGGCACATATtgcaagccacttgcctggtagaactgacaatgaaataaagaactattgGAATTCTTGGATCAAAAAGAAAATAAGAAAGCATTCTTTGTCCACCTCTTCAACCACCAACATTACACAAAATCTTGTTCATCATAATTCTAATAATAAACTAGAACACTTTTCCATCCAAGAGAATAATTTAGCAACACCAATAGCAAAACCATCACCATTTCAAGAAACCACCTTGTTTTCTCCCACATGTCCTTTGTTCATGTTTGAGCCAAGTAATAATCTCCAAACAGAATACTTTCAAATTCAAGAATCTATTGGTTTGAATTCTGAAACATGGAATCAAATTCAATCATTACCTCCTCCAATATCATCAACTTTTACAATGGACACTTTGAATTATCTACCACCTTTGATAGAGAATGTTGAAAACATGGTACCAATAAAATCTTGTAGCATGGAAGAGAAACATGGAGATAGAGATCACCAAGTACTAGAATGTTTTCAGAAGCAAGAGATGAATAATAACATTGATGAATGGGTAGAAACACATTTacaacaacaacaacaacaaTGTCCTAGTAACTTTATTTTCTGGGATAATATTGTTATTGAAGGACATGATCATCATGAACTTGGTGGTGGGGAAGAAGAAGTAGAACCATCCAATTCATCTAATATAATGGGAACAAACACAGTGATTTTTCCTTTTGCTTCTTCATCTTTTTGA 993 0.3313 MGHHSCCNQQKVKRGLWSPEEDDKLITYITSHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPDEEKLIITLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKHSLSTSSTTNITQNLVHHNSNNKLEHFSIQENNLATPIAKPSPFQETTLFSPTCPLFMFEPSNNLQTEYFQIQESIGLNSETWNQIQSLPPPISSTFTMDTLNYLPPLIENVENMVPIKSCSMEEKHGDRDHQVLECFQKQEMNNNIDEWVETHLQQQQQQCPSNFIFWDNIVIEGHDHHELGGGEEEVEPSNSSNIMGTNTVIFPFASSSF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00497 330 Coils Coil 258 278 - -
Car06g00497 330 CDD SANT 69 112 IPR001005 -
Car06g00497 330 PANTHER MYB DOMAIN PROTEIN 55 1 324 - -
Car06g00497 330 PANTHER MYB TRANSCRIPTION FACTOR 1 324 - -
Car06g00497 330 CDD SANT 17 61 IPR001005 -
Car06g00497 330 SMART sant 13 63 IPR001005 -
Car06g00497 330 SMART sant 66 114 IPR001005 -
Car06g00497 330 Gene3D - 6 66 - -
Car06g00497 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car06g00497 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car06g00497 330 Gene3D - 69 143 - -
Car06g00497 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car06g00497 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car06g00497 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car06g00497 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car06g00497 330 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00497 Car-Chr6 5022579 5024313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00497 1 292 MYB Transcription Factor Family AT1G63910 46.875 2.07e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g00497 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00497 K09422 K02947 gmx:100803556 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00497 06 5022579 5024313 Car06g00497 06 5022579 5024313 ECH
Car08g00207 08 1649769 1652989 Car06g00497 06 5022579 5024313 PCT