Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00478 ATGGGAGGAAACTGcagcaccggcaccggcaccggaaccaccaccaCCGCAACCGAACCTCCCAACCAAAATACCCCCAAAATCCTCCCTCAAAACTCCACCCcctcaccacctcaacctcccttacccacctccctcGGACGCATCCTCAACCGTCCAATGGAAGACGTTCGCTCCACCTTCATCTTCGGTCGCGAACTCGGCCGAGGCCAATTCGGCGTTACATATTTAGTAACACACAAAGTCACCAAAGAACAATTCGCGTGCAAATCAATCGCCACGCGAAAACTCATTAACCGCGACGATATCGATGACGTTCGCCGTGAAGTTCAGATCATGCATCACCTCACCGGTCACCGGAACATTGTTGAACTTAAAGGTGCTTATGAGGATCGTCACTCTGTTAACCTTGTTATGGAGCTATGTGCCGGCGGTGAACTTTTTGATCGGATTATTACTAAGGGACATTACTCCGAACGTGCTGCTGCTAATTTGTGTCGTCAGATTGTTACAGTTGTGCACAATTGTCATACTATGGGTGTTATGCATAGGGATTTGAAGCCTGAGAATTTTTTGTTCCTTGGGAATGATGAGAATTCGCCTCTTAAGGCTACGGATTTTGGTCTCTCTGTGTTTTTTAAACCAGGAGATATGTTTAAAGATCTTGTTGGGAGTGCCTATTACGTTGCTCCTGAAGTGCTGCGTAGAAGTTATGGGCCTGAAGCTGATATTTGGAGTGCAGGGATTATATTGTATATTTTGCTTTCCGGTGTCCCTCCATTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGGCATATTGATTTTGCGTCGGATCCTTGGCCTTCTATATCAAGTAGTGCCAAAGATTTGGTGAAGAAGATGCTACGAGCTGACGCTAAAGAACGACTTTCAGCAGTTGAAGTACTTAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGACAAGCCTCTTGATATTGCTGTTTTAAGCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATCGCCGAAAATCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGATACAGACAACAGTGGAACAATCACATTTGAAGAGTTGAAAGCTGGTCTCCCTAAACTTGGTAGTAAAATGTCTGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTGGATGGCAATGGAACCATTGATTATATTGAATTTATAACAGCTACCATGCATATGAATAGAATGGAAAGAGAGGATCACCTATATAAAGCCTTTGAATATTTTGACCAAGATAAGAGCGGGTTCATCACAAAGGAAGAATTGGAATCTGCACTTAAGAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGATGCAAGAATTAACTATGATGAATTTGTAGCGATGATGAGGAAAGGAAACCCCGATATAACTAAAAGACGTCGCAAATAA 1536 0.403 MGGNCSTGTGTGTTTTATEPPNQNTPKILPQNSTPSPPQPPLPTSLGRILNRPMEDVRSTFIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIITKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLGNDENSPLKATDFGLSVFFKPGDMFKDLVGSAYYVAPEVLRRSYGPEADIWSAGIILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADAKERLSAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKMSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDQDKSGFITKEELESALKKYNMGDEKTIKEIIAEVDTDNDARINYDEFVAMMRKGNPDITKRRRK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00478 511 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Car06g00478 511 Pfam EF-hand domain pair 437 499 IPR002048 GO:0005509
Car06g00478 511 Pfam EF-hand domain pair 367 427 IPR002048 GO:0005509
Car06g00478 511 ProSiteProfiles Protein kinase domain profile. 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00478 511 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Car06g00478 511 MobiDBLite consensus disorder prediction 1 30 - -
Car06g00478 511 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Car06g00478 511 MobiDBLite consensus disorder prediction 1 50 - -
Car06g00478 511 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Car06g00478 511 Pfam Protein kinase domain 64 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00478 511 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Car06g00478 511 Gene3D Transferase(Phosphotransferase) domain 1 147 326 - -
Car06g00478 511 ProSiteProfiles EF-hand calcium-binding domain profile. 470 504 IPR002048 GO:0005509
Car06g00478 511 SUPERFAMILY Protein kinase-like (PK-like) 58 320 IPR011009 -
Car06g00478 511 SUPERFAMILY EF-hand 358 499 IPR011992 -
Car06g00478 511 SMART serkin_6 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00478 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Car06g00478 511 Gene3D - 327 502 - -
Car06g00478 511 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Car06g00478 511 SMART efh_1 438 466 IPR002048 GO:0005509
Car06g00478 511 SMART efh_1 402 430 IPR002048 GO:0005509
Car06g00478 511 SMART efh_1 366 394 IPR002048 GO:0005509
Car06g00478 511 SMART efh_1 473 501 IPR002048 GO:0005509
Car06g00478 511 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Car06g00478 511 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 31 504 - -
Car06g00478 511 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 504 - -
Car06g00478 511 Gene3D Phosphorylase Kinase; domain 1 63 146 - -
Car06g00478 511 CDD STKc_CAMK 61 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00478 Car-Chr6 4811999 4816816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00478 47 511 EF-hand Containing Proteins AT4G23650 80.215 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Car06g00478 Pkinase 2.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00478 K13412 - gmx:100777096 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00478 06 4811999 4816816 Car06g00478 06 4811999 4816816 ECH
Car08g00199 08 1558348 1572609 Car06g00478 06 4811999 4816816 PCT