Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00469 ATGAACCATCCCTTTCCCAAAATCGTACGAATTCGTCTCTCTGACGCCGACGCCACCGATTCTTCTTCCGATGAAGATAAACCACTTTCCGACTTCAAAACTCGCCGCCGTGTCAAAACTATCGTTAACGAGATTACTTTCGACAAACCAACTCTTTGCAAGAAAACAAACAGAGCTCCGGCGAGTCGATTTTTCTCCGGGAAAAAGTTCCGGGGAGTGAGACAGAGACCTTGGGGGAAATGGTCGGCGGAGATAAGAGACCCATTACGGCGGGTGCGACGGTGGTTGGGAACATACAACACCGCAGAAGAAGCTGCTATTCAGTACGATAAAGCCGCCATTGAAATACGTGGCGAACACGCGCTTACAAATTTTATTCAACCGGCGATTAAAGATATAAACTCCGGTGAAGAATATCGTAGCAACAACGTTCTTTCTCCAAGTTCAGTTCTTCAGTGTTGTTGTTCTTCTTCAGAGATTGAATCCGTAACTGGAAAAGACAATGTTACCCTTCCAATAAGAGAATGTGAAAATGAATGTTCATCTTTGTTTGATAAAGTTTTGGAAGAAAGTACGTTCAAATGTGAGACCGTTTTTCCTATTCATAGTGATACGTTATTTGAGTTTGAAAATGTGACAGAGGAAGAAAGCATGTTCTTATTCCCTGATGATTTTGTTGGAAGCTTTGTTGATTCAAAGTGTCAGAGTTTCGATTTCGATTTCAAAGATTGGAACAGAGATTATGATAATTTCCAAGATTTCGGGGATTTGTTTCTTACTGCAATTTGA 789 0.4144 MNHPFPKIVRIRLSDADATDSSSDEDKPLSDFKTRRRVKTIVNEITFDKPTLCKKTNRAPASRFFSGKKFRGVRQRPWGKWSAEIRDPLRRVRRWLGTYNTAEEAAIQYDKAAIEIRGEHALTNFIQPAIKDINSGEEYRSNNVLSPSSVLQCCCSSSEIESVTGKDNVTLPIRECENECSSLFDKVLEESTFKCETVFPIHSDTLFEFENVTEEESMFLFPDDFVGSFVDSKCQSFDFDFKDWNRDYDNFQDFGDLFLTAI 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00469 262 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Car06g00469 262 CDD AP2 68 125 IPR001471 GO:0003700|GO:0006355
Car06g00469 262 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Car06g00469 262 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Car06g00469 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 6 259 - -
Car06g00469 262 Gene3D AP2/ERF domain 68 127 IPR036955 GO:0003700|GO:0006355
Car06g00469 262 SUPERFAMILY DNA-binding domain 69 125 IPR016177 GO:0003677
Car06g00469 262 Pfam AP2 domain 69 118 IPR001471 GO:0003700|GO:0006355
Car06g00469 262 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Car06g00469 262 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00469 Car-Chr6 4720686 4721474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00469 7 163 AP2-EREBP Transcription Factor Family AT4G27950 43.455 2.12e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g00469 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00469 - - mtr:MTR_8g099215 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00469 06 4720686 4721474 Car06g00469 06 4720686 4721474 ECH
Car08g00190 08 1491562 1492926 Car06g00469 06 4720686 4721474 PCT