Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00461 ATGGCTGATACAGTAGCTGAAATTCCAACTAAGAAACCAAGAGGAACCAGAAAGGCTCTCAAAGAGAAAAAACCCTCATCAACCAATGATGCCAACATCTTAGCTGCGAGCGTTCCCGATTCGAAGGGAAAACCCAAGGAACAATCTTTCGAGCAAGATTTGCTCGACATGCAGGAAAAGCTACAGCAATTGCGTCTCGAGAAGGAGAAAACCGAAGAGCTCTTGAAAGCCAAAGACGAGATCTTGAAACAAAAGGATCAAGAACTTGAAAATCGTGGCAAGGAGCAAGAGAAACTTCAGATTGAGCTTAAGAAATTGCAGAAATTGAAGGAATTCAAACCCACCATGaatttgcctatggtgaaagacaaggaacaagaaaagaaggacaagaagaagagtgggtgccctgaggtaaaaaggccttctacaccttacatgttatggtgcaaagaacaatggCAAGAGATTAAGAAGGAGAATCCAGAGGCAGAATTTAAGGACATTACAACTATGCTTGGTGCTAAATGGAAGACAGTTAGTGCAGAAGAGAAGAAGCCTTATGATGAGAAATACCATGCTGAAAAAGAAGCTTATTTGCAAGTAATTACAAAGGAAAAACGTGAAACTGAGGCAATGAAGCTATTGGAAGAGGAGCAGAAGCAAAAGACTGCTATGGAATTGCTTGAACAGTATATACAATTCAAACAAGAGACAGAAAAAGAGGGCAAGAAGAACAAGAAAGAAAAGGATCCCTTGAAACCAAAGCATCCTATGTCAGCTTATTTCTTGTATACTAATGATAGGAGAGCTGCTATTCTTGCAGAGAACAAAGGTGTCCTTGAGGTTTCCAAGGTCACATCTGAAGAGTGGAAAAACATGACAGAAGAACAAAAGAGACCCTATGAAGAGATGGCACAGAAGAACAAGGAGAAATATGCTCAAGAAATGGAGGCTTACAAACAGAAAAAAGAAGAGGAAGCTGCAAATCTCATGAAGGAAGAGGAAGAGCATATGAAACTTCAGAAACATGAAGCCTTGCAATTGCTCAAGAAAAAGGAAAAAACTGAAAACATGATCAAGGAAACAAAATTGAACCGTCAGAAAAAGAAACATAGTAAGGAAGATAAGAATAATGATCCAAACAGGCCTAAGAGACCTCCATCCTCATATTTACTATTCAGCAAAGAAGCAAGGAAAAGTATACTAGAAGAACGTCCAGGAATCAGTTCATGCAATCTCAGTGCACTTATTTCTTTGAAGTGGAAGGATATGAGTGAGGAAGAAAAACAAGTGTGGAGCGGCAAAGCATCTGAAGCAATGGATGCATACAAGAAGGAATCTGAGGAATACAACAAATCCATTGTTGCAAAGTTGGAGCAGAAAACAGATGAAGAATAA 1401 0.3612 MADTVAEIPTKKPRGTRKALKEKKPSSTNDANILAASVPDSKGKPKEQSFEQDLLDMQEKLQQLRLEKEKTEELLKAKDEILKQKDQELENRGKEQEKLQIELKKLQKLKEFKPTMNLPMVKDKEQEKKDKKKSGCPEVKRPSTPYMLWCKEQWQEIKKENPEAEFKDITTMLGAKWKTVSAEEKKPYDEKYHAEKEAYLQVITKEKRETEAMKLLEEEQKQKTAMELLEQYIQFKQETEKEGKKNKKEKDPLKPKHPMSAYFLYTNDRRAAILAENKGVLEVSKVTSEEWKNMTEEQKRPYEEMAQKNKEKYAQEMEAYKQKKEEEAANLMKEEEEHMKLQKHEALQLLKKKEKTENMIKETKLNRQKKKHSKEDKNNDPNRPKRPPSSYLLFSKEARKSILEERPGISSCNLSALISLKWKDMSEEEKQVWSGKASEAMDAYKKESEEYNKSIVAKLEQKTDEE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00461 466 MobiDBLite consensus disorder prediction 10 25 - -
Car06g00461 466 CDD HMG-box 384 447 - -
Car06g00461 466 MobiDBLite consensus disorder prediction 349 392 - -
Car06g00461 466 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 321 IPR009071 -
Car06g00461 466 Coils Coil 346 366 - -
Car06g00461 466 Coils Coil 47 109 - -
Car06g00461 466 MobiDBLite consensus disorder prediction 1 51 - -
Car06g00461 466 MobiDBLite consensus disorder prediction 238 256 - -
Car06g00461 466 Gene3D High mobility group box domain 133 215 IPR036910 -
Car06g00461 466 SUPERFAMILY HMG-box 128 201 IPR036910 -
Car06g00461 466 CDD HMGB-UBF_HMG-box 255 318 - -
Car06g00461 466 MobiDBLite consensus disorder prediction 349 364 - -
Car06g00461 466 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 139 207 IPR009071 -
Car06g00461 466 MobiDBLite consensus disorder prediction 114 138 - -
Car06g00461 466 MobiDBLite consensus disorder prediction 114 141 - -
Car06g00461 466 CDD HMGB-UBF_HMG-box 140 203 - -
Car06g00461 466 Pfam HMG (high mobility group) box 384 452 IPR009071 -
Car06g00461 466 Pfam HMG (high mobility group) box 255 321 IPR009071 -
Car06g00461 466 Pfam HMG (high mobility group) box 139 201 IPR009071 -
Car06g00461 466 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 42 461 - -
Car06g00461 466 SUPERFAMILY HMG-box 378 454 IPR036910 -
Car06g00461 466 Coils Coil 303 344 - -
Car06g00461 466 MobiDBLite consensus disorder prediction 238 258 - -
Car06g00461 466 MobiDBLite consensus disorder prediction 291 317 - -
Car06g00461 466 Gene3D High mobility group box domain 365 464 IPR036910 -
Car06g00461 466 Gene3D High mobility group box domain 238 334 IPR036910 -
Car06g00461 466 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 384 452 IPR009071 -
Car06g00461 466 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 42 461 IPR044601 GO:0003677
Car06g00461 466 SMART hmgende2 254 322 IPR009071 -
Car06g00461 466 SMART hmgende2 383 453 IPR009071 -
Car06g00461 466 SMART hmgende2 138 208 IPR009071 -
Car06g00461 466 SUPERFAMILY HMG-box 242 328 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00461 Car-Chr6 4665872 4668452 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Car06g00461 HMG_box 6.7e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00461 K09273 - gmx:100783033 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00461 06 4665872 4668452 Car06g00461 06 4665872 4668452 ECH