Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00442 ATGAGTACTTTACCGTCTTTAATTTCCTTATTCATCCTCATCTCAACAACTAAAAGCGACAAGTTCACACATGAAACAACATCATGCGAAACCTTTGGTCTTCCAATTCGATTCCCCTTTTCATTAAACCAATTAAATCAAACCAATATTCTATATAGTTACCCAGGCTTCGAACTCTCGTGTAGCAATAGAACCACCACCACCTTCAGCGAACCATTACTCACTCTCCCAAAATCCGTTGACTTTGTTGTTAAACGCATCTCTTATGTTGACCAAACAATTTGGGTCAACGATCCCGAAAAATGTCTCCCAAAACGTTTCATGTTTGATCATAATAATAGTTTTATGTTAAACCTTAAAGACTCACCCTTTCGATTGAGTGATTATTATACTTTTGTTAATTTCACATTCCTAAATTGTCCTTCAAATTCAATTGTATCATCTATAGTACCTCCCATAAGTTGTTTAAATTATGACAACAACGTTAATAATTCGGTTGTGGCTATGATGTCGGATCCTCCTTTTGGTACACCGTGGAGATCTTCGTGTGAATATATTTCGTCAGCTTATATACCGGTGAAAGATACGAATTGGTTGTTTTGGAGTGATTATGATTCTAATATACCGTTGCAGTGGGATAATCCTGATTGTAGAAATTGTGAAGCACGTGGAGGACGATGTGGATTTCTTGCTGACTATTCTTTTCGTATTTCTTGTTTCGATCTTCCCACCCAAGGTCTTTCAAGGAAAGTAAAGTATGGTTTAAGTATGGGTCTAGTTATACCTGGAGTCCTAGGTATCCTTGTGCTTACATGGATGCTATGCAACAAGAAAAATAGAGGTGATGAAGTACAACGTCAAACAGGCACTGAATTTTCAACCTTTACTATGCCGCACCCCCCAATTCTTGTTATGGGCCTTGATGGGCCAACGATAGAGAGATATCCCAAAACCCAACTTGGTGAAAGTGGAAGATTGCCAAGGCCCAATGACAATATTTGCTCTATATGTCTTTGTGAATATCAACCCAATGAGGTATTGAGGACCATCCCTGAGTGTAATCACTATTTTCATGCAAATTGTATAGATGGATGGCTCAAGACAAATGCTACTTGCCCTTTGTGTAGAAATTTACCAGAGAGATCTACTTCTTTTCCTTCGGTTTTGCCTCTATCTCCAACTTCTTAA 1188 0.3822 MSTLPSLISLFILISTTKSDKFTHETTSCETFGLPIRFPFSLNQLNQTNILYSYPGFELSCSNRTTTTFSEPLLTLPKSVDFVVKRISYVDQTIWVNDPEKCLPKRFMFDHNNSFMLNLKDSPFRLSDYYTFVNFTFLNCPSNSIVSSIVPPISCLNYDNNVNNSVVAMMSDPPFGTPWRSSCEYISSAYIPVKDTNWLFWSDYDSNIPLQWDNPDCRNCEARGGRCGFLADYSFRISCFDLPTQGLSRKVKYGLSMGLVIPGVLGILVLTWMLCNKKNRGDEVQRQTGTEFSTFTMPHPPILVMGLDGPTIERYPKTQLGESGRLPRPNDNICSICLCEYQPNEVLRTIPECNHYFHANCIDGWLKTNATCPLCRNLPERSTSFPSVLPLSPTS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00442 395 ProSiteProfiles Zinc finger RING-type profile. 334 376 IPR001841 -
Car06g00442 395 SMART ring_2 334 375 IPR001841 -
Car06g00442 395 SUPERFAMILY RING/U-box 329 379 - -
Car06g00442 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 380 IPR013083 -
Car06g00442 395 Pfam Wall-associated receptor kinase galacturonan-binding 28 98 IPR025287 GO:0030247
Car06g00442 395 Pfam Ring finger domain 333 376 IPR001841 -
Car06g00442 395 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 388 - -
Car06g00442 395 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 1 388 - -
Car06g00442 395 CDD RING-H2_PA-TM-RING 334 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00442 Car-Chr6 4517739 4520111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00442 28 379 C3H Transcription Factor Family AT2G25410 34.521 4.14e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00442 - - mtr:MTR_8g099495 612.068