Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00441 ATGGCTTCTTCGACTCTAATATACTACTATGTATTTTCTTATGTCTGTATTTTGCACCTTCAAAGTACTAAAGGGGAACAAACAATATGCAACACTTTATCATGTGGTGACATAGATATTGATTTTCCTTTCGGTTTAAAACAAGGAAATCAAGATAAGCGATGTAGCTATTATCCCAATCCAAGCTTCCAACTTTCATGTGACAACCAAAGCCAAACAATTCTCCACCTCCCAAAAACACGGGACTTAATAATTAAAAACATCGACTACAAGAACCAAAAAATTCAAGTCAACGACCCCGAAGGTTGTCTTCCAAAACGATTTTTATATGATTGGAACCTTATAGATTCACCTTTCCAATTAAACCCCGAAATTTATACGAGTAATATTTATAACCTCACTTTCCTTCGTTGCCCCTCAAACATAACCGAATCATCATCTCACTTGCCATTACCAATAATTTCTTGTCTAAGTGATAAAGAACATTCGAACTTGGCTTCGGTTGTACTAGTTTCATGGGCACCGCCTATTGATTCAACAACGTTGTCTAGACCGTACGATTGTGAGGTGATATCAACGGCTCTTGTTCCTCTACCGTGGATGGGTATGCCTATGTGGCCTGATCTTAATAGTGATGTTGAGTTGGTTTGGACCGAGCCCAGGTGTGAGAATTGTGCAATTAGTGGCCAAATTTGTGGGTTTTCTAAGGATGAAAAAACCCTTCAACTTGAATGTTTCCATAATCCCTCCAAGGAAGGTATCTCAAGAAGTGCAAAATATGGTATAGCTATAGGAGTGGGAATACCAGGACTGTTGTCCCTAATTGCCTTTTCTTGCTTTATATGTGGAAAGTTCAAGAGGACCCAATTTCATGTACAGAGGAGCACAAATCTTCCTACAGCAACAATAACATTAGAACCACTCCCTTCTCTTGTAATGGGCCTTGATAGGTCCACAATTGAAAAATATCCCAAAACTCTTCTTGGAGAGAGTGGCCGCTTATTGAAGCCCAATGACAACACTTGTTCAATTTGCTTATCTGAATATGAACCTAAAGACACATTGAGGAGTATCCCTGACTGCAACCATTATTTTCATGCTGCATGTATAGATGAGTGGCTCAAAATGAATGGTACATGCCCTATATGTAGGAATTCACCGGAGGGGTATTCTTCCACGCTTCTCCCTTCTTTTTCTTCGTTATCCTTCTCTTTGTCGCCATTGTCCTCTTCACGATAA 1239 0.3947 MASSTLIYYYVFSYVCILHLQSTKGEQTICNTLSCGDIDIDFPFGLKQGNQDKRCSYYPNPSFQLSCDNQSQTILHLPKTRDLIIKNIDYKNQKIQVNDPEGCLPKRFLYDWNLIDSPFQLNPEIYTSNIYNLTFLRCPSNITESSSHLPLPIISCLSDKEHSNLASVVLVSWAPPIDSTTLSRPYDCEVISTALVPLPWMGMPMWPDLNSDVELVWTEPRCENCAISGQICGFSKDEKTLQLECFHNPSKEGISRSAKYGIAIGVGIPGLLSLIAFSCFICGKFKRTQFHVQRSTNLPTATITLEPLPSLVMGLDRSTIEKYPKTLLGESGRLLKPNDNTCSICLSEYEPKDTLRSIPDCNHYFHAACIDEWLKMNGTCPICRNSPEGYSSTLLPSFSSLSFSLSPLSSSR 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00441 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 388 IPR013083 -
Car06g00441 412 CDD RING-H2_PA-TM-RING 341 384 - -
Car06g00441 412 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 411 - -
Car06g00441 412 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 411 - -
Car06g00441 412 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247
Car06g00441 412 ProSiteProfiles Zinc finger RING-type profile. 342 384 IPR001841 -
Car06g00441 412 Pfam Ring finger domain 340 384 IPR001841 -
Car06g00441 412 SUPERFAMILY RING/U-box 334 386 - -
Car06g00441 412 SMART ring_2 342 383 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00441 Car-Chr6 4514357 4516915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00441 30 387 C3H Transcription Factor Family AT2G46495 33.787 8.30e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00441 - - cam:101497311 823.157