Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00431 ATGGAATCCGATTTCGAGACGAACGATATGCTCACACTCACACACGATCAATTTGATGCCAACGACAATGATAATTTAGATGTTGAAGGGGAAAGATGTGGAATCTGTATGGACATGGTTATTGACAGAGGAGTACTTGATTGCTGTCAGCACTGGTTCTGCTTTGCCTGCATTGACAACTGGGCAACCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATTACTTGTGTTCCAGTATATGATACCATAGGGAGCAACAAAGTTGAAGATGGCTCATTCTTCAGAGATGATGACTGGTCGATTGAAGGGAAGAACAACAGTCTCTCATTTCCCTCTTATTACATTGATGAAAATGCAGTTACTTGCTTGGATGGTGATGACTGCAAAATTCGAAATGGATTGGCCAGTATTGAAGAAGATTCTGGTCTTGATACATCAATCGCTTGTGATTCATGTGATATATGGTACCACGCCTTTTGTGTGGGATTTGATACTGAAGAAACATCTGAAAGTACATGGTTATGCCCAAGATGTGTGGTTGATGAAGTTTCTAAAGGAAGAGATGCCAATTCAATAAAGAAGGAAACCCTGGATTTTAACCCAGACAATAATACCAGTCAATGCCATGCTGAGGATTCCAGAATGGTGTCTGTGTCCATTGCTGATACTGGGGAGACAGCTGTTGTTGTCTCAATGGTTGACAGAAACAGATGGGTTCCAGAAACAAGTGACAGTGGCATATTGCCTCCTGAAGTTGACGGGGATCTGCTAACTGAACCATGTAATTTAATGCACGACACAAATAATCAACTGCAGGGAGCAGATAAGACAACTATGTCACCAATCATGGAGGGAGAAGAACTGGAGCTGTCCTTATCACACAATATGTCCTGTAACCCAACTTCTAAGTCCTTGGTGCATAATGATTTAAAGAAAAGTGATAATGGAACAAGATGTGAATTGAGTAGCTTTGATGGAACCAAGTTATTTGATGAGTCCCATGTCAAAACTAGTCCATGCAAAATTGAATCTGATATAGGTCTTCATCTTGGTTTATCGGTGGGCTCTTTTCTACCTGTTGATAACGTGGAGAAGAGCGAAACAAAAGATCAAGTAACTGATGTCCCGTGCTCGAATCTAGAAGAATTTCTTTTGAAAGATGAAATTGAAACCAATGCTTGTGAGGACAATGCCAGAGTGACTGGTAAAAAGAGGAAGCATGTTGATTACAGTCATGAGCAAATTCATATAAAAGTTGAGGATGAAGGTGCCAAGCTTGAACTATCGGTTGAAGCTTCACAAAAGAAAATTAGAGCAACTTCCAGTGAAATGATTAGTGCTAATGAATCGACTGATGCTCAACTTTCTGACAATGCTAAGAAAAGTCCTGCTTTAAAGCATTCTCCATCAAAGGAGATTGCGGCATCAGATATAATGAACATAGTTAAAGGGACGAACCGGAGGCTTTCCAAGGGACTTGCTGGCACTAATGATAGTGAAATGTTAGGTGAAAAGAAAGAAAACATGGCTGGATTGAGGGTTAAAAAGATTATGAAGAGAGTTTCTGATAGTGGAGAATCATCGTCAGTAGTCCAAAATCTAAGGAACGAAATTAAAGAAGCTGTCCGCAATAAATCCTCTGTGAACTTTGAGGAAACCCATTTTGATAAAAAACTTCTTGAAGCATTTAGGGCTGCTATAACAGGTCCTAAAACGGAACCTGTAAATAAGTTATCCCCTTCAGCTCTAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTTCGTGAACATCTAACAAGGAAAATATTTTCAACTTCCAATGGAAGACGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTTCAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTActaagaaaaagttcagagggctcggaatcacagctagctcctgaatgtcaggcaaagaatccaattctttccagattgtatatagcagatacatctgttttcccacggaAAAAGGATGTCAAACCTTTCTCAGAGCAGACTAAGCATAATAACCCATCAGCAAAAGGACCAAATCAATCTCTTGATACCAAGACTATTAAAACAACAGAGGTAAATAATCTTTTATTGAAGAACAGAGTTTGTTCGTCTGAGATAAAAGTAGATAAGAAGATTGTACGTGGTTCAGTTGGTGATAATTCAGATTCTGGTAAAGTACATTTAAGCAGTCACTCAGAAGGGACGTCACTTTCTTCTTCAGCTGGTTCCAAAGTTGGCACAAAGGAGTCGGGCCTTAAATCTGATTCTGTGAAAAGTGATAAAAGAAAATGGGCCTTGGAGGTTCTTGCTAGGAAAACAGCTGTTGGCAGCAATAAATCCGCAAATGAAAATCAGGAAGACGATGCGATTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGATATGCGACCAGTGTTGGCACCTTGTCGCCATAATAAAATTCCTGTATCAGCCAGGCAGACACAACTTTACCGCCTGACGGAACGCTTATTGAGGAACACAAATCTGCCAACCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAGTTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCTGGTGTATCTGAACCTTTGTTCACAAGAACTATTGCATCGCACAAACAACACAAAATCCAATGTAGACGCAGACACAAGCCCACCAACCGCATCACCAGTGCATACTGATCAATCAGAACAAAATTCACATGATCTTTCGACTGACCCTGCAACTCAAATAGCATTAAAAAATGCTGGTCTGTTGTCTGATTCGCCACCAAGCAGTCCACAAAAGAACAGTGAAATTTGTAATGGAAATGAAGTGTCAGGGCCTGATGATATACTTGAACTAGATTCTCGTCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGAGGATGATTACATAGGCGCTAGTATAAAGATCCCAAACCTAAAACAAGAGCAGAGTGAATCAAAAGTGAAACTTGTTTTCTCCACCACGAGCTTGAAGAAAACAAATAATGCTTTGGATTGTGCAGACTGTAAGGGGTCTGAAAAAAATGAAGTGCCAGGAGATGCCTCTTGCTCACCAAACTGTTGCAGTGATGCAGTCCACAGGGATTCTACCATTGATGCGGAGATTGGCCAGCCTTCTGTTTCTTCTGGGCTACTACCATGTGACGGTGCTGTTGAGCCAGTTGATTCAGAGTTTGAAGAATTATATGGCCCTGATAAAGAACCACTTATAaaaaagtttccagatgttgaattacaatcattacatggagagggcaagacggaaactcaaAGCAAGCATAATGATTGCCATAAGGACAGAGAACTTGTCTCAGAAAAAGCAGTAAATGATGCTGAATTAGGGAATGAGAATCTCACAGAAAATGTGTCTGTCCCTACCAACACCGACAAATCTTCCAATATATCTGGGACCAATGAAAATCTTCAAAGGAAGGAAGAGAAACCTGGCATCCCTGCACAGCAGCTTACCAATGAAAATCTAGTAGTGAAGAAGGTAGAAGCCTACATCAAGGAGCATATCAGGCCACTGTGTAAGAGTGGTGTGATCACAGCTGAACAGTACAGGTGGGCTGTTGCAAAAACAACTGATAAGGTTATGAAGTATCATTCCAAATCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTCAAGAAACTTGCAGAGCAGTATGTTGAAGCTGCCCAACAGAATAGAAAAAGTTGA 3852 0.3858 MESDFETNDMLTLTHDQFDANDNDNLDVEGERCGICMDMVIDRGVLDCCQHWFCFACIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSFFRDDDWSIEGKNNSLSFPSYYIDENAVTCLDGDDCKIRNGLASIEEDSGLDTSIACDSCDIWYHAFCVGFDTEETSESTWLCPRCVVDEVSKGRDANSIKKETLDFNPDNNTSQCHAEDSRMVSVSIADTGETAVVVSMVDRNRWVPETSDSGILPPEVDGDLLTEPCNLMHDTNNQLQGADKTTMSPIMEGEELELSLSHNMSCNPTSKSLVHNDLKKSDNGTRCELSSFDGTKLFDESHVKTSPCKIESDIGLHLGLSVGSFLPVDNVEKSETKDQVTDVPCSNLEEFLLKDEIETNACEDNARVTGKKRKHVDYSHEQIHIKVEDEGAKLELSVEASQKKIRATSSEMISANESTDAQLSDNAKKSPALKHSPSKEIAASDIMNIVKGTNRRLSKGLAGTNDSEMLGEKKENMAGLRVKKIMKRVSDSGESSSVVQNLRNEIKEAVRNKSSVNFEETHFDKKLLEAFRAAITGPKTEPVNKLSPSALKAKKSMLQKGKVREHLTRKIFSTSNGRRKRAWDRDCEIEFWKYRCMRASKPEKIETLKSVLDLLRKSSEGSESQLAPECQAKNPILSRLYIADTSVFPRKKDVKPFSEQTKHNNPSAKGPNQSLDTKTIKTTEVNNLLLKNRVCSSEIKVDKKIVRGSVGDNSDSGKVHLSSHSEGTSLSSSAGSKVGTKESGLKSDSVKSDKRKWALEVLARKTAVGSNKSANENQEDDAIFKGNYPLLAQLPTDMRPVLAPCRHNKIPVSARQTQLYRLTERLLRNTNLPTIRRTADTELAVADAVNIEKEVADRSNSKLVYLNLCSQELLHRTNNTKSNVDADTSPPTASPVHTDQSEQNSHDLSTDPATQIALKNAGLLSDSPPSSPQKNSEICNGNEVSGPDDILELDSRPELDIYGDFEYDLEEDDYIGASIKIPNLKQEQSESKVKLVFSTTSLKKTNNALDCADCKGSEKNEVPGDASCSPNCCSDAVHRDSTIDAEIGQPSVSSGLLPCDGAVEPVDSEFEELYGPDKEPLIKKFPDVELQSLHGEGKTETQSKHNDCHKDRELVSEKAVNDAELGNENLTENVSVPTNTDKSSNISGTNENLQRKEEKPGIPAQQLTNENLVVKKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTDKVMKYHSKSKNANFLIKEGEKVKKLAEQYVEAAQQNRKS 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00431 1283 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Car06g00431 1283 Pfam Ring finger domain 32 72 IPR001841 -
Car06g00431 1283 Pfam PHD-finger 148 183 IPR019787 -
Car06g00431 1283 MobiDBLite consensus disorder prediction 1155 1199 - -
Car06g00431 1283 MobiDBLite consensus disorder prediction 444 474 - -
Car06g00431 1283 MobiDBLite consensus disorder prediction 751 779 - -
Car06g00431 1283 SMART ring_2 33 71 IPR001841 -
Car06g00431 1283 MobiDBLite consensus disorder prediction 958 978 - -
Car06g00431 1283 Coils Coil 535 555 - -
Car06g00431 1283 Coils Coil 1266 1283 - -
Car06g00431 1283 MobiDBLite consensus disorder prediction 690 715 - -
Car06g00431 1283 MobiDBLite consensus disorder prediction 696 715 - -
Car06g00431 1283 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Car06g00431 1283 MobiDBLite consensus disorder prediction 916 946 - -
Car06g00431 1283 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Car06g00431 1283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 203 IPR013083 -
Car06g00431 1283 MobiDBLite consensus disorder prediction 444 467 - -
Car06g00431 1283 SMART PHD_3 131 183 IPR001965 -
Car06g00431 1283 PANTHER RING FINGER PROTEIN 41, 151 103 1279 - -
Car06g00431 1283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 107 IPR013083 -
Car06g00431 1283 MobiDBLite consensus disorder prediction 744 786 - -
Car06g00431 1283 SUPERFAMILY RING/U-box 32 78 - -
Car06g00431 1283 MobiDBLite consensus disorder prediction 1162 1187 - -
Car06g00431 1283 MobiDBLite consensus disorder prediction 958 985 - -
Car06g00431 1283 PANTHER RING/U-BOX PROTEIN 103 1279 - -
Car06g00431 1283 SUPERFAMILY FYVE/PHD zinc finger 148 189 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00431 33 84 C3H Transcription Factor Family AT3G58030 37.037 5.10e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car06g00431 PHD 1.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00431 - - gmx:100808102 1825.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00431 06 4437076 4448599 Car06g00431 06 4437076 4448599 ECH