Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00400 ATGTTGGAAGGCGGTGCAAAGTTCCCAATAGATCTCAACAAGCATAATAACAACTTCTATGATTTCTCCCAAGGCTTTTACCACAAGCTAGGTGAGGGTACCAATATGTCAATCGACAGCGTTGGTAGCTTGCAAACAAGCAATGGTGGAGGATCGGTTGCAATGTCTATTGATAACAGCAGTGTTGGGTCCAATGATTCCCATACCCGCATGTTGGACCACCAAGGGTTGAAGAGGCGTGCCAATGATAACTACTCTGTTGCACACAGTGTCAATCGTCGTGGAAGAGTCACACATGCATTGAGTGACGATGCTTTAGCTCAAGCTCTGATGGACAATAATTCTCCTACTGAGGGGCTTGAAAATTTTGATGAGTGGACAATTGATTTGAGGAAGCTAAATATGGGCGAGGCTTTTGCTCAAGGAGCTTTTGGGAAACTCTACAGAGGTGCATGCCGTAAGCCTATGGTGTGGTGCATTGTTACTGAGTATGCTAAAGGTGGATCAGTTCGGCAGTTCTTAACCAAGCGCCAAAACCGGTCCGTTCCTCTCAAACTAGCTGTCAAACAAGCCTTGGATGTTGCAAGAGGCATGGCATATGTTCATGGTCTGGGATTGATCCATAGGGACTTGAAATCTGACAACCTTTTGATTTTTGGTGACAAGTCAATCAAAATTGCTGACTTTGGAGTCGCCCGGATTGAGGTGCAAACTGAAGGAATGACCCCTGAGACTGGAACATACCGTTGGATGGCTCCAGAGATGATCCaacataggccttacacacagaaggtggatgtatatagctttgggattgtcctgtgggaactCATCACAGGTATGCTTCCATTTCAGAACATGACAGCAGTACAGGCAGCATTTGCAGTTGTCAACAGAAATGTTCGTCCAATCTTGCCCAATGAATGTTTGCCTATTCTCCGTGAGATAATGACAAGATGCTGGGATCCCAACCCTGATGTCAGGCCACCATTTACTGAAATTGTAGCTATGCTTGAAAATGCCGAGATCGAGGTCATTACCACAGTTCGGAAGGCCAGGTTTAGGTGTTGCATAACTCAACCAATGACTGCGGAGTGA 1098 0.4326 MLEGGAKFPIDLNKHNNNFYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSIDNSSVGSNDSHTRMLDHQGLKRRANDNYSVAHSVNRRGRVTHALSDDALAQALMDNNSPTEGLENFDEWTIDLRKLNMGEAFAQGAFGKLYRGACRKPMVWCIVTEYAKGGSVRQFLTKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNRNVRPILPNECLPILREIMTRCWDPNPDVRPPFTEIVAMLENAEIEVITTVRKARFRCCITQPMTAE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00400 365 PANTHER SERINE-THREONINE PROTEIN KINASE 150 356 - -
Car06g00400 365 PRINTS Tyrosine kinase catalytic domain signature 200 218 IPR001245 GO:0004672|GO:0006468
Car06g00400 365 PRINTS Tyrosine kinase catalytic domain signature 246 256 IPR001245 GO:0004672|GO:0006468
Car06g00400 365 PRINTS Tyrosine kinase catalytic domain signature 309 331 IPR001245 GO:0004672|GO:0006468
Car06g00400 365 PRINTS Tyrosine kinase catalytic domain signature 162 175 IPR001245 GO:0004672|GO:0006468
Car06g00400 365 PRINTS Tyrosine kinase catalytic domain signature 265 287 IPR001245 GO:0004672|GO:0006468
Car06g00400 365 ProSiteProfiles Protein kinase domain profile. 74 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00400 365 PANTHER SERINE-THREONINE PROTEIN KINASE 3 151 - -
Car06g00400 365 Pfam Protein tyrosine and serine/threonine kinase 149 338 IPR001245 GO:0004672|GO:0006468
Car06g00400 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Car06g00400 365 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 150 356 - -
Car06g00400 365 CDD STKc_MAP3K-like 147 338 - -
Car06g00400 365 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 3 151 - -
Car06g00400 365 SUPERFAMILY Protein kinase-like (PK-like) 121 338 IPR011009 -
Car06g00400 365 SMART serkin_6 133 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00400 365 Gene3D Transferase(Phosphotransferase) domain 1 123 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00400 Car-Chr6 4203002 4206476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00400 22 365 MAP Kinase Kinase Kinase AT2G24360 68.448 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Car06g00400 PK_Tyr_Ser-Thr 9.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00400 - - gmx:100788536 683.33