Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00389 ATGGCGACGCTGAATAAAGAAGCTGTcaccgccaccaccacctccaccgccaccgccgccgtcgctgcagcTCACGAAGTAGGAGAAGAGAAGAACGGCATAAACCAGGAGCTATGGCAAGCTTGTGCTGGTCCTCTTGTTAATCTACCTTTAGCTGGAACTCATGTCGTTTACTTCCCTCAAGGCCATAGTGAACAGGTTGCAGCATCTTTGAAGAAAGATGGCGATGCCCAAATACCAAACTATTCCAATCTTCCCTCTAACTTACCGTGTCTCCTTCACAGTCTCACCTTGCATGCAGATCTAGAAACAGATGAAGTGTACGCCCGGATGACACTTCAGCCAGTGTCTTCTTTTGACATGGATGCCTTGTTAAGATCAGATATTTCTCTCAAATCAAGCAAACCACAACCCGAGTTTTTCTGTAAACAACTGACAGCGAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAGAAAATTTTCCCTCCTCTTGATTTCTCGGTGCAACCTCCTGCTCAAGAACTTGTGGCAAGGGATTTGCATGGTAAAGTTTGGAAGTTCCGCCATATATATCGTGGACAACCGAAACGTCACTTGCTTACAACTGGATGGAGTCTATTTATCAGCGGAAAGAAGCTTTTAGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAGCAGCAGTTGCTTTTGGGTATCAGACGAGCAAACAGGCAACCCACCCATTTATCATCCTCGGTACTATCAAGTGATAGTATGCACATAGGAATTTTGGCTGCAGCAGCTCATGCTGCCGCAAACAGTAGCCCCTTCACCGTGTTTTATAATCCTAGGGCCAGTCCTTCAGAATTTGTTATTCCATTGGCTAAGTACTACAGGGCAGTATACAGCCACCAAATATCACCTGGCATGCGCTTTCGAATGATGTTCGAAACAGAAGACTCAGGAACAAGAAGATATATGGGTACAGTTATAGGTGTCAGTGATCTAGATTCTGTGAGATGGAAAAATTCACAGTGGCGAAATTTGCAGGTTGGTTGGGATGAATCTGCAGCTGGGGAAAGGCGAAGCCGGGTCTCAATATGGGAAATTGAACCTGCGACTGCCCCATTTTTCATATGTCCGCCTCCATTCTTCAGATCCAAGAGACCAAGACAACCCGGAATGCTTGATGATGAGCCGTTTGATTTCAGTAACGTTTTCAAGAGTACAATGCCTTGGCTTGGTGATGATATGAGTATAAAGGATCCCCAGGGTTTCCATGGCTTGAGCTTAGCTCAATGGATGAACATTCAACAAAATCCTGCTCGGTCTAGTTCATTGCAACCAAATCACGTGTCTTCCATGTCTGGATCAGTTCTACAAAATCATCCCGGCGCTGATATTGCTCATCAATTGGGTTTTTCTAATCAACAAATCTCTCAGTCAAACAATGTCAATGCTCCAGGTATACATCAGAATTCCCAACAACTCGATCACCTTCAGAAGCTGCCATTCACATCTAGTGGATTGGGAACAGCCATGCAGCCAGAGCAACAGTTGTGTAATGTTTCTCAATATCCTAGGCAGAACATGGCAAATCAAACTCTACCACAGAGTCAAGTTCAGACCCAACTTCTGAATCCCCCGAGTATTGTCCAATCGAACAATATTCTTCAACCGCAACAACCATCCATTCAAAACCATCAACTCCATAGAAGTCTCTCTCAGAACCCTCCACAGCAGCTTCAACAAACTATAATGAGTCAGAACCAACAGCAAAATATGATTCAACACACTATACCTGATCATATTAATCAACAGTTTCATATGTCTGACAACCAGGTTCGGCTTCAGTTGTTACAGAAGCTTCAACAGCAACAACAAACATTCTTGGCCCAACAATCTGCATTGCAGCAGCCTGCTCAACTTATTCAAAACCAAGACCAGCAGCGGCAACTTTTAGATGCAACACAGAACTCTAGGACCGTAACTCCTAGTCAAGTGTTGGAAATTCCTCCTTCACTTCAAAACTCACTACCTGAAGCTAATTCTATGATCCACCAGATGGCAACTCCTAGTAGCCAGAACAATATTCAGTTCTCTCATCCATCCCAGCAACCAAAGCTTCAATATCAACAACAGCATACGCAACCCGGGTTGCTGTCTAAAATGTCTAGTCGTGTTGGACTTCCTCCTGCAACTACAATTAATCAGTTATCTGCTAATGGTTGCAGTATACGGACTGTAGCAACTGCAACAGCGCCATCAGTAATTACTGATGATGTCCCATCTTGTTCCACTTCGCCTTCCACAAATAACTGTGCCAGTGCGCTTCCTCCTGTGACAACAACCCAGATCCTTAGGAGCACAATAGGGGATGACATGGCTCAGTCTGCTGTAACAATATTGAGTCAGAATGCCTTAGAAACCATGTCATCTAATGCAAACGTGGTGAAATATGTACAGCCAAAGTATGAAGTTAAACCTTCTTTAAACATGTCTGAAAATCGCAATCAAGGGAATTTTTACCCGCAGGCTTGCTTGAATGGCGGTGCTGTGCAGACTGATTGTTTGGATACATCATCTTCTACAGCTTCAGTTTGCCTTTCTCAGAGCGATACACACTTTCATCAGAATGACAGCCAGTTACCTTACAATCCACAGTCGATGTTTTGTAGGGACAACATTCAAAACGTGGAAGTTCAGGCTGATGCTAGGTgcaatgttgcatatggcaacggcaatgagcaaatgagaatgccactgAATTTAGACTCTCCGGTAACCAAAGGAACAACAAGGTCGGGCAAGGATTTGTCAAATAATTTCTCTTCAGGAGGCTTGCTTGGGGGATATGAAAATAACAGTGGTGCTCAGCCAGAACTTTCATCTTCCATGGTTTCACATTCATTTGAACTCCCTGATATGACCTTTAATTCAATTGATTCCACTGTAAATGATAGTAGCTTCTTGAATACGGGTCCATGGGCTCCACCGCCGCCGCCACAGCAGTTTCAACGGATGAGAACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACAAGATATTCAGGATACGAGGAGCTTAAACATGATCTGGCTCGTAGGTTTGGTATTGAGGGACAACTGGAGGACCGACAAAGGATAGGATGGAAACTTGTTTATGTAGATCATGAAAATGATGTTCTGCTAGTAGGAGATGACCCTTGGGAGGAGTTTGTTATTTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACAGATGAGCATAGATGGAGATTTTGGAAATGGTGGCCTTCCAAAACAAGCTGGTAGCAGCTCAGATGGTGGTAACACTTAA 3366 0.4248 MATLNKEAVTATTTSTATAAVAAAHEVGEEKNGINQELWQACAGPLVNLPLAGTHVVYFPQGHSEQVAASLKKDGDAQIPNYSNLPSNLPCLLHSLTLHADLETDEVYARMTLQPVSSFDMDALLRSDISLKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSVQPPAQELVARDLHGKVWKFRHIYRGQPKRHLLTTGWSLFISGKKLLAGDSVLFIRDEKQQLLLGIRRANRQPTHLSSSVLSSDSMHIGILAAAAHAAANSSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMMFETEDSGTRRYMGTVIGVSDLDSVRWKNSQWRNLQVGWDESAAGERRSRVSIWEIEPATAPFFICPPPFFRSKRPRQPGMLDDEPFDFSNVFKSTMPWLGDDMSIKDPQGFHGLSLAQWMNIQQNPARSSSLQPNHVSSMSGSVLQNHPGADIAHQLGFSNQQISQSNNVNAPGIHQNSQQLDHLQKLPFTSSGLGTAMQPEQQLCNVSQYPRQNMANQTLPQSQVQTQLLNPPSIVQSNNILQPQQPSIQNHQLHRSLSQNPPQQLQQTIMSQNQQQNMIQHTIPDHINQQFHMSDNQVRLQLLQKLQQQQQTFLAQQSALQQPAQLIQNQDQQRQLLDATQNSRTVTPSQVLEIPPSLQNSLPEANSMIHQMATPSSQNNIQFSHPSQQPKLQYQQQHTQPGLLSKMSSRVGLPPATTINQLSANGCSIRTVATATAPSVITDDVPSCSTSPSTNNCASALPPVTTTQILRSTIGDDMAQSAVTILSQNALETMSSNANVVKYVQPKYEVKPSLNMSENRNQGNFYPQACLNGGAVQTDCLDTSSSTASVCLSQSDTHFHQNDSQLPYNPQSMFCRDNIQNVEVQADARCNVAYGNGNEQMRMPLNLDSPVTKGTTRSGKDLSNNFSSGGLLGGYENNSGAQPELSSSMVSHSFELPDMTFNSIDSTVNDSSFLNTGPWAPPPPPQQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKHDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVICVRCIKILSPQEVQQMSIDGDFGNGGLPKQAGSSSDGGNT 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00389 1121 ProSiteProfiles B3 DNA-binding domain profile. 141 243 IPR003340 GO:0003677
Car06g00389 1121 Gene3D - 305 376 - -
Car06g00389 1121 Pfam B3 DNA binding domain 141 242 IPR003340 GO:0003677
Car06g00389 1121 Gene3D - 139 242 IPR015300 -
Car06g00389 1121 ProSiteProfiles PB1 domain profile. 1009 1093 IPR000270 GO:0005515
Car06g00389 1121 PANTHER AUXIN RESPONSE FACTOR 24 1115 - -
Car06g00389 1121 MobiDBLite consensus disorder prediction 918 944 - -
Car06g00389 1121 MobiDBLite consensus disorder prediction 562 589 - -
Car06g00389 1121 MobiDBLite consensus disorder prediction 1100 1121 - -
Car06g00389 1121 CDD B3_DNA 140 232 IPR003340 GO:0003677
Car06g00389 1121 SUPERFAMILY CAD & PB1 domains 1022 1086 - -
Car06g00389 1121 SUPERFAMILY DNA-binding pseudobarrel domain 131 270 IPR015300 -
Car06g00389 1121 Pfam AUX/IAA family 1008 1094 IPR033389 -
Car06g00389 1121 Gene3D - 1004 1098 - -
Car06g00389 1121 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 1115 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car06g00389 1121 SMART B3_2 141 243 IPR003340 GO:0003677
Car06g00389 1121 Pfam Auxin response factor 267 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car06g00389 1121 MobiDBLite consensus disorder prediction 919 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00389 Car-Chr6 4042987 4050632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00389 30 497 B3 DNA Binding Superfamily AT1G19220 69.133 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car06g00389 AUX_IAA 1.8e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00389 - - ccaj:109803454 1548.1