Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00386 ATGGCTTCATCTTCATCATTATCACTTTCTCTTCCTTTTCAATTTCGATTCCGTCGCAACAACACTCACACTCTTCGCAATTTCACTCGCGTCACGGCGTCAACCACCGATATTCCCCTTCTTCAAGTAAACGATTTAAGGGCAAAAATCGTTGAATCCAATGTTGAAATTCTCCGAGGCGTTAATCTCACCGTTAACAGAGGAGAAGTTCACGCTATTATGGGAAAGAACGGTTCTGGTAAAAGCACTTTCGCTAAGGTTCTTGTTGGTCATCCAGATTATGAAGTTACAGGTGGAAGTGTTGTTTTCAAAGGAGAAAATTTGCTTGAAATGGAACCGGAGGAAAGAGCGCTTGAAGGTCTTTTCATGAGTTTTCAATCTCCTGTTGCAATTCCTGGTGTTTCAAATGATCAATTTCTTGTCATGGCTTATAATGCTCGGAGGAAGAAACTTGGACTTCCTGAACTTGGACCCCTTGAGTGTTTTTCTTATCTAATGGAGAAGCTACAACTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTAAATGAAGGGTTTAGTGGAGGTGAGCGCAAACGCAATGAGATCTTGCAGCTTGCGGTTTTGGGGGCAGATTTGGCTATTTTGGATGAAATTGATTCGGGATTGGATGTTGATGCTCTCAGGGATGTGGCAAGTGCAGTTAGTCGGATTCTTACCCCAGAGAATTCTCTGTTGATGATTACGCACTATCGACGAATTCTTGATCTTTTGAAACCTACCCATGTCCATGTTATGGACAATGGAAAAATTGCGAGGACAGGCGACATAACTATGGTAGAAGCAATCGAGGCAGATGGATATGAAACAGTCTCTGCTTTAACTTAA 870 0.4184 MASSSSLSLSLPFQFRFRRNNTHTLRNFTRVTASTTDIPLLQVNDLRAKIVESNVEILRGVNLTVNRGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERALEGLFMSFQSPVAIPGVSNDQFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVSRILTPENSLLMITHYRRILDLLKPTHVHVMDNGKIARTGDITMVEAIEADGYETVSALT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00386 289 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 32 286 IPR010230 GO:0005524
Car06g00386 289 CDD ABC_FeS_Assembly 41 282 IPR010230 GO:0005524
Car06g00386 289 Gene3D - 40 288 IPR027417 -
Car06g00386 289 Pfam ABC transporter 58 212 IPR003439 GO:0005524
Car06g00386 289 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524
Car06g00386 289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 271 IPR027417 -
Car06g00386 289 TIGRFAM sufC: FeS assembly ATPase SufC 41 284 IPR010230 GO:0005524
Car06g00386 289 SMART AAA_5 67 264 IPR003593 -
Car06g00386 289 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 287 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00386 Car-Chr6 4014590 4018690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00386 54 269 Calmodulin-binding Proteins AT2G36910 23.913 2.28e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00386 K09013 - gmx:100811883 447.203