Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00376 ATGGGAAGAAGAAAGTGCTCACAATGTGGTAAGATAGGACATAATTCTAGGACTTGCACACCCTTCACCAATATTGGACTTCGTCTCTTTGGTGTCCAACTACCTTACAATAACATACCCCCCTCATCTAATTCTGTTGTTAGTAATAATAACATCAAGAAAAGCTTTAGCATGGACACCTTTCCCTCACCAATATCCTCTCCATCTTCCTCACTCTCTTCATCAATAATAACCAATATTGATGAAATTAATCATCATAAATCCACCTCTAATATTTCCTATCCATCAGATTGTTTTATAGGTCCACCCCAAGACAAGAAGAAAGGTGTTCCATGGACAGAAGAGGAGCATAGAATATTCCTTGTTGGACTAGAGAAGGTGGGAAAAGGAGATTGGAGGGGTATCTCTAGAAATTTTGTCACTACAAGAACCCCTACACAAGTTGCCAGTCATGCTCAAAAGTACTTTCTTCGATTGGCAACTATCAATAACAAGAAGAAGCGACGCTCAAGTCTCTTTGACTTGATTGAGACAAAGAACAACGTAGATGGTCGAAGCCATGCTAATTCAGTGATTTTGGATCATAAATTAGAAGATAATTGTAAATGTGAAGAAGTTGAGATTATTAATGATGCCACCACTTTGTCATTGCTAGGGGGGTGCATTAAACAAGAAGAAACAGCAAAATTATCAGCTAAGCAACAAATTAATTACTCTCAAGTTGTAGAACATCATCAAGTTGTGCCTTTAATTAATTGGATACATCCTAATTTGGAACTCACTCTTGCAGTTGCATCCCCTAATAACACCCAGCTGGAACTAAATCAACCATCCCCTGGCCCATTCCTTCTAGGCCCAATAAGCGTCACTTAA 873 0.3872 MGRRKCSQCGKIGHNSRTCTPFTNIGLRLFGVQLPYNNIPPSSNSVVSNNNIKKSFSMDTFPSPISSPSSSLSSSIITNIDEINHHKSTSNISYPSDCFIGPPQDKKKGVPWTEEEHRIFLVGLEKVGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATINNKKKRRSSLFDLIETKNNVDGRSHANSVILDHKLEDNCKCEEVEIINDATTLSLLGGCIKQEETAKLSAKQQINYSQVVEHHQVVPLINWIHPNLELTLAVASPNNTQLELNQPSPGPFLLGPISVT 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00376 290 Pfam Myb-like DNA-binding domain 111 156 IPR001005 -
Car06g00376 290 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Car06g00376 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Car06g00376 290 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Car06g00376 290 SMART sant 108 158 IPR001005 -
Car06g00376 290 PANTHER TRANSCRIPTION FACTOR KUA1 3 290 - -
Car06g00376 290 CDD SANT 111 156 IPR001005 -
Car06g00376 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 107 158 IPR006447 GO:0003677
Car06g00376 290 Gene3D - 110 163 - -
Car06g00376 290 SUPERFAMILY Homeodomain-like 106 160 IPR009057 -
Car06g00376 290 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 290 - -
Car06g00376 290 ProSiteProfiles Zinc finger CCHC-type profile. 4 19 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00376 Car-Chr6 3912514 3913968 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car06g00376 Myb_DNA-binding 9.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00376 - - cam:101500241 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00376 06 3912514 3913968 Car06g00376 06 3912514 3913968 ECH