Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00359 ATGTCGATGATGTTAGGGGAACCACCTCATCGCACAAATCCAACCATACACGTGCCACCGTGGCAAATGATGAGCGATTCAACGGCGGAGATCTTTTCACCTTTAACCACCAATGACGATTACTCTCCGTACTATTTGCAAGAAGCGCTTAGCGCTCTTCAGCACTATATACCCTCCAACGAACACGACGACGATTCCGACTCAGACGCTATTCCGAGTCACGAATCGGTGGATGTTTACTCGTGCGATAACTTCCGCATGTTCGAGTTCAAGATTAGGAGATGCGCACGTGGCAGGTCACATGACTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAAGCTCGCCGCCGTGACCCGAGGAAGTTTCACTATTCCGGCACGGCATGTCCCGATTTTCGCAAAGGAAGTTGCAAGAAAGGCGATTCGTGTGAATTCGCGCATGGAGTTTTTGAGTGTTGGCTCCACCCTGCTCGTTACCGGACTCAGCCATGCAAAGACGGAACAAGTTGCCGCCGGCGAGTTTGTTTTTTCGCTCACACGTCGGAGCAACTCAGGACTCCGACGCAGCAGAGTCCCCGGAGCGTAAACTCCACCGATTCATACGACGGTTCTCCTCTGAGGCTGGCGATTGAGTCTTCCTGTGTTAAATCACTTCCTTTCATGTCTTCTCCCGGTTCGGTTTCTCCGCCGGTAGAGTCTCCACCGATGTCTCCATTGACATCTTCGCTTGGAAGGTCTTTTGGTTTTGGTTCTGTGAATGTGAATGAAATGGTGGTTTCTCTGAGAAATTTACAACTTGGTAAAATGAAGTCGTTACCTTCTTCTTGGAATGTTCAAATGGGATCTCCTCGATTCGGATCTCCAAGAGGACCCGTGATCCGACCCGGATTTTGTAGCTTGCCCACGACGCCTACACAGACGCCGAATCGCAGCGGTGTTAATCATTTTGATCTTTGGGATCAGAGGTGTGAGGAGGAGCCTGCGATGGAGAGGGTTGAATCTGGAAGGGACATAAGAGTGAAGATGTTTGAGAAACTTAGCAAAGAAAATTCTCTTGATAGAtcgggtttgggttcgggttcgggttcgggtCAGGTTGATGGGGCTCCGGATGTTGGATGGGTTTCGGAGCTAGTGAGCCCTTTCTTGGGCTGA 1158 0.4922 MSMMLGEPPHRTNPTIHVPPWQMMSDSTAEIFSPLTTNDDYSPYYLQEALSALQHYIPSNEHDDDSDSDAIPSHESVDVYSCDNFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTSEQLRTPTQQSPRSVNSTDSYDGSPLRLAIESSCVKSLPFMSSPGSVSPPVESPPMSPLTSSLGRSFGFGSVNVNEMVVSLRNLQLGKMKSLPSSWNVQMGSPRFGSPRGPVIRPGFCSLPTTPTQTPNRSGVNHFDLWDQRCEEEPAMERVESGRDIRVKMFEKLSKENSLDRSGLGSGSGSGQVDGAPDVGWVSELVSPFLG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00359 385 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 149 IPR000571 GO:0046872
Car06g00359 385 MobiDBLite consensus disorder prediction 1 20 - -
Car06g00359 385 Gene3D - 121 196 - -
Car06g00359 385 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 10 380 - -
Car06g00359 385 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Car06g00359 385 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Car06g00359 385 PANTHER UNKEMPT FAMILY MEMBER 10 380 IPR045234 -
Car06g00359 385 MobiDBLite consensus disorder prediction 352 373 - -
Car06g00359 385 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00359 Car-Chr6 3769147 3770948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00359 79 272 C2H2 Transcription Factor Family AT5G12850 51.256 3.40e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car06g00359 zf-CCCH 1.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00359 - - aprc:113867365 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00359 06 3769147 3770948 Car06g00359 06 3769147 3770948 ECH