Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00325 ATGGGTGAGATGCGTCTACCTAGCTTAGAAGCAGAAGCTACAACTCCTAAGAAATCATGTTCGGAGGTCCATTTACCCGACCCGGAACAAAAGAGGCCCAAAAGGCCCAGAGAAAGCAACAACACTAACAGCAAACACCCGGTTTACAGAGGTGTTAGAATGCGGGCCTGGGGAAAGTGGGTATCCGAAATCCGCGAGCCCAGAAAGAAGAACCGGATCTGGCTGGGAACGTTCGCGACTCCAGAAATGGCGGCTCGAGCTCATGACGTGGCAGCACTAGCCATAAAAGGCAACTCCGCCATTCTGAACTTCCCTGAACTTGCTCCTTCAATGCCCCGACCCGATTCAAACTCGCCTCGTGATGTTCAAGCAGCCGCCGTGAAAGCAGCCGCTATGGAAGTTACGGAACAGCAAAGTTGGTCATCATCGGAAAAGCCAGACGAACTGGGTGAAATAGTGCAACTACCGTCATTAGAAACGAGTTTTGAAATACCCGACCCGAATAACGAATTGGTGTATTTTGATCCATGGCCTTATTCTCACAGTTGGTATAATCAAAGCATTTACGATGAAAGGGATTATTTTATCGGGGAACAGATTTCAATGCAGCATAACGACGAGTCTGGAAGTAATAATAATAATGTGATTCTTTGTGGTTTTGAGGGTTCATTGTGGCAGCATTAA 684 0.4737 MGEMRLPSLEAEATTPKKSCSEVHLPDPEQKRPKRPRESNNTNSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGNSAILNFPELAPSMPRPDSNSPRDVQAAAVKAAAMEVTEQQSWSSSEKPDELGEIVQLPSLETSFEIPDPNNELVYFDPWPYSHSWYNQSIYDERDYFIGEQISMQHNDESGSNNNNVILCGFEGSLWQH 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00325 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 27 225 - -
Car06g00325 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 225 - -
Car06g00325 227 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Car06g00325 227 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Car06g00325 227 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Car06g00325 227 MobiDBLite consensus disorder prediction 1 48 - -
Car06g00325 227 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Car06g00325 227 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Car06g00325 227 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Car06g00325 227 MobiDBLite consensus disorder prediction 22 41 - -
Car06g00325 227 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Car06g00325 227 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00325 Car-Chr6 3482784 3483982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00325 3 179 AP2-EREBP Transcription Factor Family AT5G11590 51.741 1.80e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g00325 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00325 K09286 - gmx:100778201 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00325 06 3482784 3483982 Car06g00325 06 3482784 3483982 ECH
Car06g00325 06 3482784 3483982 Car08g01784 08 27814238 27815443 PCT