Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00316 ATGGAGCGCATCGTTGGCGGCAAGTACAAGCTCGGCCGCAAGATCGGAAGCGGTTCTTTCGGTGAAATCTACCTCGCTACGCATATTGATACCTTCGAAATCGTTGCCGTCAAAATCGAAAATAGTAAAACAAAGCATCCACAACTACTTTATGAAGCAAAACTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCAAGCACAAAATGGTCTGGCATTGATGCGGAGGATAATGTGCTTGTTCTTGATTTACTGGGGCCTAGTCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACTGTGTTACTGTTAGCCGATCAAATGATCACTAGAATAGAATATGTACATTCTAAAGGATATTTACATAGAGATATTAAACCGGATAACTTCCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATGATTGATTTTGGGCTAGCAAAACGATATCGGGACTCCGCAACCAATCGCCACATTCCTTACAGGGAGAACAAAAACTTAACAGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAATCACTAGGATATGTTTTTTTATACTTCCTTAGAGGAAGCCTTCCATGGCAAGGTCTAAAGGCTGCCACAAAGAAACAGAAGTATGATAAAATATGTCAGAAGAAGGTGTCAACTCCTATCGAGGTACTATGCAAATCGCACCCCGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCGTTGACATTTGATCAACGACCTGATTATGGATTCTTGAAGCGCCTATTTAGAGATCTATTTGCTCGGGAAGGTTATGAATTTGATTACATTTTTGATTGGACTATTTTAAAGTATCAGCAATCACAGAAGCATATAGTGCAGCCTTCCTTATCTCCAGTTCCTGGTGCAAATAACCGACACGCAGTTCCAGTGGATATTGACAACCATCAAGGGCACGGTGAAGAGCGAATTAGATCAGGAAATGCTACTGGTTCTGGTGTTAAAGTGCAGTTTAAACCACCAGCCGGTAGAAACTTGAGCTCACAAATCCCTCTTGACAAGAATATTTTTGGAGAAGCAAGTATGCCCTCTACTTCATACTTTCCCGATGGTACTTCAAAAAGGAACTCTTTGAAGCCTGACTTGTCTGCTGAACCTTCCAACCTTGGACAAGGGCAAGGTAGTAAAATTGGCACTTCAAGTAGCTGGATGTCATCTCTGCAGCGTCTAACTTCTTCCAAATGA 1275 0.4212 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSTKWSGIDAEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLLLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYMIDFGLAKRYRDSATNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVFLYFLRGSLPWQGLKAATKKQKYDKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDYIFDWTILKYQQSQKHIVQPSLSPVPGANNRHAVPVDIDNHQGHGEERIRSGNATGSGVKVQFKPPAGRNLSSQIPLDKNIFGEASMPSTSYFPDGTSKRNSLKPDLSAEPSNLGQGQGSKIGTSSSWMSSLQRLTSSK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00316 424 MobiDBLite consensus disorder prediction 307 359 - -
Car06g00316 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00316 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Car06g00316 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Car06g00316 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00316 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Car06g00316 424 MobiDBLite consensus disorder prediction 371 424 - -
Car06g00316 424 Gene3D Transferase(Phosphotransferase) domain 1 1 322 - -
Car06g00316 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00316 424 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 411 - -
Car06g00316 424 PANTHER CASEIN KINASE-RELATED 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00316 Car-Chr6 3401887 3406433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00316 9 215 EF-hand Containing Proteins AT4G23650 29.108 1.21e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Car06g00316 Pkinase 1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00316 K08960 - gmx:100800342 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00316 06 3401887 3406433 Car06g00316 06 3401887 3406433 ECH
Car06g00316 06 3401887 3406433 Car08g01777 08 27735950 27740619 PCT