Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00310 ATGTCTGTGCCAGTGGAACAAGGGTATGATGTCTTACAAGAGGTTCCATCAATGGAAACCAAAGACAGAACCATTGGATTGAACCTCAAAGCCACTGAACTGAGACTTGGTTTACCAGGTTCTGAATCTCCAGAGAGAGAAAATGGTGGTGGGTTGTCCATGCTCAAGAGTTTGGTGTCTGGTGCTAAAAGGGGTTTCTCTGATGCTATTGATGGAGGTTCTGGGAAGTGGGTTCTCTCTGGAAATGGTGGATCTGAAATGGGTTTGTGTAAAGATGGAAACTTGTTCTCTCCTAAAGCTAAAGGTGGTGTTGGTTCCGTGCCTGAATGCATTAACCAACAAAACCCTTTGTCTGTTTCAGTTGTTAAAGaaactgttccacaatctccaaagcctttgcatgacaataacaagCCACAGATTTCTGCTCCTGCTGCAAAGGCACAAGTTGTGGGATGGCCACCAATCCGATCTTTTAGGAAGAACTCAATGGTTTCTCAGCCTCAAAAGAATGATGCTGACGCAGAAGCCAAATCTGAATGCCTTTATGTAAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTGAATAATTTTAGCTCTTATAGGGAACTTTCTTCAGCACTTGAAAAGATGTTCAGTTGTTTTACAATCAGTCAATGCAGCTCATATGGGATTTCTTGTCGAGAAAAAAACTTAAGTGAAAGTAGATTGATTGATCTCCTTCATGGTTCGGAATATGTGCTTACCTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGTGACGTTCCGTGGGAGATGTTCACCGAGTCATGCAAGAAGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTCGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 909 0.4147 MSVPVEQGYDVLQEVPSMETKDRTIGLNLKATELRLGLPGSESPERENGGGLSMLKSLVSGAKRGFSDAIDGGSGKWVLSGNGGSEMGLCKDGNLFSPKAKGGVGSVPECINQQNPLSVSVVKETVPQSPKPLHDNNKPQISAPAAKAQVVGWPPIRSFRKNSMVSQPQKNDADAEAKSECLYVKVSMEGAPYLRKVDLNNFSSYRELSSALEKMFSCFTISQCSSYGISCREKNLSESRLIDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKKLRIMKSSEAIGLAPRAMEKCKSRN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00310 302 Pfam AUX/IAA family 32 293 IPR033389 -
Car06g00310 302 PANTHER AUXIN-INDUCED PROTEIN 17 295 - -
Car06g00310 302 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 295 IPR003311 GO:0005634|GO:0006355
Car06g00310 302 SUPERFAMILY CAD & PB1 domains 179 283 - -
Car06g00310 302 Gene3D - 175 296 - -
Car06g00310 302 ProSiteProfiles PB1 domain profile. 181 284 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00310 Car-Chr6 3370818 3374601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00310 184 287 B3 DNA Binding Superfamily AT2G46530 35.577 1.16e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car06g00310 AUX_IAA 1.1e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00310 K14484 - gmx:100803754 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00310 06 3370818 3374601 Car06g00310 06 3370818 3374601 ECH