Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00305 ATGGAGACGGAGCGTCCATCGAAGAGTTGGAGCATCCATACCCGATCCGAAATCATCTCCAAATACCAAGTCATGGAACGGATCGGCTCCGGAGCTTACGCCGACGTCTACCGCGGCCGTCGTCTCTCCGACGACGTAACAGTCGCTCTGAAGGAAATCCACGACTACCAGTCTGCATTTCGAGAAATCGAAGCTTTGCAGATGCTTCAAGGTTCACCAAACGTCATCGTTTTGCATGAATACTTCTGGCGCGAAGATGAAGACGCCGTTCTCGTCCTTGAGTACCTGACCACTGACTTAACCACCGTCATTTCCGACGCTGCTAAGGAAGGTCTCTCACTCCCTGTTGGTGAGATGAAACGTTGGATGATTCAGATTCTTTGTGGCCTTGACGCGTGTCACCGGAACATGATTATTCATCGAGATTTGAAGCCTTCTAATCTCTTGATTTCTGATCGTGGAATTCTCAAATTGGCTGATTTTGGACAGGCAAGGATACTCACAGAGGATGGATTTGATGCTTTTGAGGAGAATCCACCACCGTGTGAGCATGATGGTTCTAATCATGAAAGTTTACTTCATCAACCTGAAGCTTTTCCTCATACTGACAGCACAAGCCAATTTGGATGTGGAAACCAAGAGCATGGAGGTAGTCATGAAGAGTATTTTAGTGTTTTAGATGAGCTGAAAACAAAGAGGTCCACAGATGACATTGATAAGGATACAAACATTCCGGATGGAAATACTTCTTGTCTTGCAACATGCACAACAAGTGATATAGATAACGATCCTATGAGAACTTCTTTTAGCTATGAAGCATTGGAAGGGGAAGATAAAGAACATGGTTGTCTCACGTCATGTGTTGGAACTCGATGGTTCCGGGCTCCTGAGTTACTTTATGGATCCACAAACTATGGTGTAGAAATTGATCTCTGGTCACTTGGATGTATTTTTGCTGAGCTCTTGACTCTAAACCCCTTGTTTCCTGGAACAGCTGATATTGACCAGCTCAGTAGAATTATTAATGTTTTGGGCAACCTTGATGAGAGAGCTTGGCCTGGTTGTTCAAAACTTCCTGATTATGGAATAATCTCGTTTAGCAAGGTAGAAAACCCTGCTGGTGTTGAAGCGTGCCTGCCCAACCGCTCCCCTGATGAAGTGTCTCTAGTCAAAAAACTGGTTTGTTATGATCCTGCTAGGAGGGCTACAACAATGGAACTACTCCATGACAAGTACTTCAATGAAGAACCTCTTCCTGTTCCTGTTTCTGAGTTGCGAGTTCCTTTGACCAAAAAAAACGAAGATGAGGATTCTGTTGGTGGGTGGCATGATTACAATGAAACGGGTTCTGATTCTGATTTTGATGACTTTGGCCCTATGAATATCACCAGAACTGGTACCGGTTTCTCCATTCAGTTTCCTTGA 1425 0.4456 METERPSKSWSIHTRSEIISKYQVMERIGSGAYADVYRGRRLSDDVTVALKEIHDYQSAFREIEALQMLQGSPNVIVLHEYFWREDEDAVLVLEYLTTDLTTVISDAAKEGLSLPVGEMKRWMIQILCGLDACHRNMIIHRDLKPSNLLISDRGILKLADFGQARILTEDGFDAFEENPPPCEHDGSNHESLLHQPEAFPHTDSTSQFGCGNQEHGGSHEEYFSVLDELKTKRSTDDIDKDTNIPDGNTSCLATCTTSDIDNDPMRTSFSYEALEGEDKEHGCLTSCVGTRWFRAPELLYGSTNYGVEIDLWSLGCIFAELLTLNPLFPGTADIDQLSRIINVLGNLDERAWPGCSKLPDYGIISFSKVENPAGVEACLPNRSPDEVSLVKKLVCYDPARRATTMELLHDKYFNEEPLPVPVSELRVPLTKKNEDEDSVGGWHDYNETGSDSDFDDFGPMNITRTGTGFSIQFP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00305 474 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Car06g00305 474 PANTHER CYCLIN-DEPENDENT KINASE 10 13 429 - -
Car06g00305 474 SUPERFAMILY Protein kinase-like (PK-like) 10 431 IPR011009 -
Car06g00305 474 PANTHER CELL DIVISION PROTEIN KINASE 13 429 - -
Car06g00305 474 Pfam Protein kinase domain 281 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00305 474 Pfam Protein kinase domain 22 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00305 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Car06g00305 474 Gene3D Transferase(Phosphotransferase) domain 1 110 421 - -
Car06g00305 474 ProSiteProfiles Protein kinase domain profile. 22 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00305 474 Gene3D Phosphorylase Kinase; domain 1 13 109 - -
Car06g00305 474 SMART serkin_6 22 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00305 Car-Chr6 3322577 3325293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00305 4 474 Core Cell Cycle Gene Families AT4G28980 62.343 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Car06g00305 Pkinase 5.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00305 - - mtr:MTR_8g103240 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00305 06 3322577 3325293 Car06g00305 06 3322577 3325293 ECH
Car06g00305 06 3322577 3325293 Car08g01764 08 27605869 27608259 PCT