Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00304 ATGGGTGAAGATGAGGGTAGTGATTGCCCTCCACAAAACGCACCATTGGATGCCGTTTCAACTGCAACGCCGAAGAAGCTTGCTAGGCAGCTCGATTTCAACGCTTTTCCCGGTGGGATTCCGGTTACTTCACCTTTGCCGGAGCAGACGCAACCACCACTGACGACGACACTGCCATCTCTACCTTCAGCTAAATTTGTGAAACCAGAATCTCCAAAATCAAAAACAAGACCAAACTTTGAGACAAAAGATGTTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACATTCAAAATGCTTAAAGCTATATTGTGAATGTTTTGCGTCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTTAACAATGTTGACAATGAAGCGGCTAGACGAGAAGCTGTTGAAGCAACTTTAGAACGCAACCCAAATGCATTTAGACCAAAAATTGCGAGCAGCCCTCATGGAACACGGGATAGCAAGGAGGAGGCTGGGGAAGTTTTAATATTAGGAAAGCACAACAAGGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGCGAATGTTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAAGGAAGTGATGAGCGACAGGCTTTGTTCCATGGAGATCAAAACAACAATATGGCATATATTCAGCAGGCAGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGTTATTCATCTCCGCCAGTGTCGAGAAAAAGAAAAGGTCCGGAACTCTGGCCATCCATTAAGGATCCATCTGTTGGCAAGCTGGCACAACAGGCAAATCTTGTCAGAAGTCCTGCAGCACCCTCCTCATCCTTGTCTCCTATCCCAGGTGCTCGTGTTGGACCTTCAACGTTAGGCCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGATGGAGCTTTGCACTGTTCTGGTGCTAGCATCTGGACAAGCCACTAAAACACTTGCAGACCAGAAGAATTTAATGGATAAGCACACAGAAGATCAGACAGAAACCTCTCTTGCTTCTTCAAATCAAGCGCAATTACCAAATCAAATGGAAGCTGATGTTGAGAAAGCTACGGCTGATGATTGTTCGAGTGCAAACCAAACTGATAAAACCAGTCCTGAAAATTCCAGTTCAGATGGTGGTGACGTCCCAAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCATTGATGTGTGATGAGCAAGATACAATGTTCATGACTTCTGCCCCCTCTATTGGGTCAATGGGCCATGCTTGCAACACATCTTCACAATTGCCTTATGGACGAGGAGCAACAGAGGTCTATGCAGAGCAAGAAAGGATTGTGTTGACGAAACTCAGAGATTTCCTTAATAGGGTTATCACTATGGGAGAAATAAATGAAACAAAGTGTTCTTCATTAGCCAGAAGTGAGTTAGAGATTCAAAAGGACCCAATCATCAATAGCACCGAGAATGCCAGTACTGAGGCAGTGCATCAGCAGGGGCTGGGAGCCACTAGTAATGGCATTGCTAAAGCTGTTGCCAACACCACCAACACCATCACTTCAACATCTTTGGTCCCTTGTAGTTTTGTTCCTGAAAATGGGGAAACTAAGCCAAAGGTCGAAAAGTAG 1686 0.4431 MGEDEGSDCPPQNAPLDAVSTATPKKLARQLDFNAFPGGIPVTSPLPEQTQPPLTTTLPSLPSAKFVKPESPKSKTRPNFETKDVTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPHGTRDSKEEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERQALFHGDQNNNMAYIQQAANAAITGAIGSSGYSSPPVSRKRKGPELWPSIKDPSVGKLAQQANLVRSPAAPSSSLSPIPGARVGPSTLGPSKFMYRSLLADIIQPQHLMELCTVLVLASGQATKTLADQKNLMDKHTEDQTETSLASSNQAQLPNQMEADVEKATADDCSSANQTDKTSPENSSSDGGDVPKGRPMSPGTLALMCDEQDTMFMTSAPSIGSMGHACNTSSQLPYGRGATEVYAEQERIVLTKLRDFLNRVITMGEINETKCSSLARSELEIQKDPIINSTENASTEAVHQQGLGATSNGIAKAVANTTNTITSTSLVPCSFVPENGETKPKVEK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00304 561 MobiDBLite consensus disorder prediction 350 418 - -
Car06g00304 561 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 90 125 IPR005172 -
Car06g00304 561 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 176 210 IPR005172 -
Car06g00304 561 ProSiteProfiles CRC domain profile. 89 213 IPR005172 -
Car06g00304 561 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 60 543 - -
Car06g00304 561 MobiDBLite consensus disorder prediction 1 21 - -
Car06g00304 561 MobiDBLite consensus disorder prediction 248 269 - -
Car06g00304 561 MobiDBLite consensus disorder prediction 359 373 - -
Car06g00304 561 MobiDBLite consensus disorder prediction 38 83 - -
Car06g00304 561 MobiDBLite consensus disorder prediction 384 403 - -
Car06g00304 561 SMART CXC_2 173 214 IPR033467 -
Car06g00304 561 SMART CXC_2 88 128 IPR033467 -
Car06g00304 561 PANTHER TESMIN/TSO1-RELATED 60 543 IPR028307 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00304 Car-Chr6 3313737 3319865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00304 1 497 CPP Transcription Factor Family AT4G29000 55.941 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Car06g00304 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00304 - - gmx:100777698 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00304 06 3313737 3319865 Car06g00304 06 3313737 3319865 ECH