Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00299 ATGCCATCATTCTCTATCTTCCCATCAATTCAAACCCCTAATTTAGACCAACCTCATCTCTTCAATTCCATCAAATTCCCCAATTTCCGTTTCAATTCAACACTCTCTCCACCACCACAACACTCTCTCCCCAACTTCCCCCAACTCTACATAACCTCCACCACTCTTCGCCGTAGAAATAATATCCACTTCAGAAAAGCTTTTAAAGATTCCggtggtggtgctggtggtggtggcggcggagatggtggtggaggtgACCCTGATGTGGACAAAAAGACTAATGGACCTTTTCCAGATTGGTTGAATTTCACTTCTGATGATGCCAAAACGGTTTTTGCTGCTCTTGCTATATCGCTTGCATTTCGTACGTTTATTGCTGAGCCTAGGTACATTCCTTCCTTGTCCATGTATCCTACCTATGATGTTGGAGATAGAATTGTTGCTGAAAAGGTTTCATACTATTTTAGAAAGCCGTGTGCAAATGATATTGTGATATTTAAAAGCCCTCCAGTTCTTCAAGAAGTTGGATACACCGATGATGATGTTTTCATAAAACGTGTGGTTGCAAAGGAAGGTGATATCGTAGAGGTTCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAGGGATGAGAAGTTTATCAATGAACCACCAAATTACGAGATGAAACCCACACGTGTGCCAGAGAACTACGTTTTCGTGATGGGAGACAACCGCAATAACAGCTATGACTCCCACGTGTGGGGTCCCCTGCCAGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCGAATAGAATTGCCGGAACAATTGCTAAGGAAGGGTGCGCTGTTGAAACCAAGCCAGAGACTACTACTCTTGCATCTCAATGA 885 0.4034 MPSFSIFPSIQTPNLDQPHLFNSIKFPNFRFNSTLSPPPQHSLPNFPQLYITSTTLRRRNNIHFRKAFKDSGGGAGGGGGGDGGGGDPDVDKKTNGPFPDWLNFTSDDAKTVFAALAISLAFRTFIAEPRYIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERDEKFINEPPNYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTIAKEGCAVETKPETTTLASQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00299 294 PRINTS Bacterial leader peptidase 1 (S26A) family signature 125 141 IPR000223 GO:0006508|GO:0008236|GO:0016020
Car06g00299 294 PRINTS Bacterial leader peptidase 1 (S26A) family signature 184 196 IPR000223 GO:0006508|GO:0008236|GO:0016020
Car06g00299 294 PRINTS Bacterial leader peptidase 1 (S26A) family signature 228 247 IPR000223 GO:0006508|GO:0008236|GO:0016020
Car06g00299 294 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 96 277 - -
Car06g00299 294 MobiDBLite consensus disorder prediction 67 92 - -
Car06g00299 294 CDD S26_SPase_I 128 260 IPR019533 GO:0004252|GO:0006465
Car06g00299 294 SUPERFAMILY LexA/Signal peptidase 123 272 IPR036286 -
Car06g00299 294 Gene3D Umud Fragment, subunit A 122 279 - -
Car06g00299 294 PANTHER SIGNAL PEPTIDASE I 96 277 IPR000223 GO:0006508|GO:0008236|GO:0016020
Car06g00299 294 TIGRFAM sigpep_I_bact: signal peptidase I 110 268 IPR000223 GO:0006508|GO:0008236|GO:0016020
Car06g00299 294 ProSitePatterns Signal peptidases I signature 3. 233 246 IPR019758 GO:0004252|GO:0016021
Car06g00299 294 Pfam Signal peptidase, peptidase S26 109 266 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00299 Car-Chr6 3269034 3271859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00299 137 267 MADS-box Gene Family AT1G29960 32.576 1.57e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00299 K03100 - gmx:100815810 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00299 06 3269034 3271859 Car06g00299 06 3269034 3271859 ECH