Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00294 ATGCAGATTATGGGTCTGGGTCATAGGTGTCCTACTGCTGGTGCTGTAGCAGCTACTTCTTTTTGTAGTCATGACGGTGCATTGGCAGATAATGTGGTATGGTTTGCTTCAGTTGGAATCTTCACTTTGCCAGCTCTTAGGTCATCATCCATGTATGATGTTTCTGGTGTTCAAAGCTTTTCTTCCAGTGTGCAGAGTACTCCAGAAAAAAATGGCCATTCCGATGATGCTTCAAGATGTTCAGAACTCCTTCAGGAGTTTATGAAATATGGTCCAAAGAAGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACATGTCTTCAAAAACCAGGACGACTGAAGCTAAGCCATCTGGTAAGATAATTAAAAAACAAGACACAAAAAAGGTATCTAGTCTTAGTCGTCAGCCCTCAAAAAAGCAAAATCGCAAGGGCGAAAACCCCATCCGACTCATACCTCCTCCTGACCAGGCTTCTGATTTTGGACATCCGAACACATGGATCTGTAAAAATGCTGCTTGTAGGGCGGTTCTATCAATGGATGACACATTTTGTAGACGGTGTTCTTGTTGTATCTGTCATCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTAGTATGCACATCTGAATCTACTCAAGGGGACTCCTGTGGGTTATCTTGCCATATTGAATGTGCCCTTCAACATGAAAAAGTGGGAGTGATTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCGTCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAACAGCTAAGTATAGCAAAAGAAGCCCGACGCATAGATGTACTCTGTTATAGGATATATTTGAGCTACAGGCTTCTGGATGGAACTTCAAAGTTTAAAGACCTGCATCAAATGGTACAGGAGGCGAAGGCTAAACTGGAGACAGAAGTTGGTCCTGTTGACGGGGTTTCTACCAAAATGGCGCGAGGCATTGTCAGTAGACTCCCTATTTCCAGTGATGTGCAGAGACTTTGCACTCTTGCTATTGAGAAAGCTGATAGCTGGCTGGCCACTCTTCCCAATTTAAATCCAGGTTCCATAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAGCTTCCTCTGTCAAAATCATTTTGATTGAAATGTCAAATATGTGTTCCGAGGACATTAAGGGGTACAAGCTCTGGTATTACAAGTGTCGAGAAGAACCAGACTCAAAGGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCTGACCTTCAACCTTGCACAGAATATACTTTTCGGATTATGTCCTACACTGACCTGGGTGACCTGGGTCATTCTGAGGCTAAGTGTTTCACTAAGAGCATCAACATAATTCAAAACAATCCCTCTAAGTCTGTTGCTATGAATCATAAAAAACAGAACCTTCAAACTGGGTGCCATCCTTCTGGCTCCAAGATGGAGCTCAATCCCACAATGACAGATATTGGATTTAAGGTTCGAGACCTTGGAAATTTTTTGCGTCTTGCTTGGGCTCAAGAACGTAGTTACTCTGAGGAGTTCTGTTGTGCTGATATGAAAAATTGCTGTGGACAAAGTGAAATGAACAAGCCCAAAATTCCAGAAACTTGTTTGCCTTCAGATTCTCTATGCCTCGATTTGAATGTTGTTTCAGTCCCTGATTTGAATGAAGACCTAACACCTCCTTTTGAGTCTTCTAGGGATGAAGGTAATGGTTGCACTTTACTGCAGGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATCTAGAGAAAAATGATTTAGCAAGATCACATGGGAGTGGTGACTCTCAAACTTGGGTTCATCCGCCAAGAGAAGTGTCAGCTGTTGACTCTCGTGTAAAAGTAGGCAGGAAAAGGGCTGCGAGCACAAATGAAGAGGCTCATGATTGTGATAGCACTTTGATAAATGGTTCTCCTTTACGTATGCCTGATGGTTTGCGTCCGTTGGATGAAAACTTTGAGTATTGTGTGAAAGTAATCCGTTGGCTAGAGTGCGAGGGCCACATCAAACAGGAGTTTAGGTTGAAATTGTTAACATGGTTTAGTTTGAGATCGACAGAACAGGAACGCAGGGTGGTAAATACCTTCATTCAAACTCTTATGGATGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATATTGTATCCAGCAAGAGACCAAAAAATGGATTCAGTAGTAAAGCTGGGGCATCAAATTAA 2289 0.4242 MQIMGLGHRCPTAGAVAATSFCSHDGALADNVVWFASVGIFTLPALRSSSMYDVSGVQSFSSSVQSTPEKNGHSDDASRCSELLQEFMKYGPKKELLQTCFDKDKKNMSSKTRTTEAKPSGKIIKKQDTKKVSSLSRQPSKKQNRKGENPIRLIPPPDQASDFGHPNTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALQHEKVGVIDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKEARRIDVLCYRIYLSYRLLDGTSKFKDLHQMVQEAKAKLETEVGPVDGVSTKMARGIVSRLPISSDVQRLCTLAIEKADSWLATLPNLNPGSIEGSLPAACKFVFEEVTASSVKIILIEMSNMCSEDIKGYKLWYYKCREEPDSKDPVSVFPKSQRRILISDLQPCTEYTFRIMSYTDLGDLGHSEAKCFTKSINIIQNNPSKSVAMNHKKQNLQTGCHPSGSKMELNPTMTDIGFKVRDLGNFLRLAWAQERSYSEEFCCADMKNCCGQSEMNKPKIPETCLPSDSLCLDLNVVSVPDLNEDLTPPFESSRDEGNGCTLLQAVEADDDAASHDLEKNDLARSHGSGDSQTWVHPPREVSAVDSRVKVGRKRAASTNEEAHDCDSTLINGSPLRMPDGLRPLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIVSSKRPKNGFSSKAGASN 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00294 762 ProSiteProfiles Fibronectin type-III domain profile. 370 469 IPR003961 GO:0005515
Car06g00294 762 PANTHER VIN3-LIKE PROTEIN 1 98 757 - -
Car06g00294 762 Pfam Fibronectin type III domain 376 455 IPR003961 GO:0005515
Car06g00294 762 CDD PHD_VIN3_plant 191 255 - -
Car06g00294 762 PANTHER VIN3-LIKE PROTEIN 2-RELATED 98 757 IPR044514 GO:0010048|GO:0040029
Car06g00294 762 MobiDBLite consensus disorder prediction 108 161 - -
Car06g00294 762 Pfam PHD - plant homeodomain finger protein 171 289 IPR032881 -
Car06g00294 762 CDD FN3 375 454 IPR003961 GO:0005515
Car06g00294 762 Gene3D Immunoglobulins 371 468 IPR013783 -
Car06g00294 762 SUPERFAMILY Fibronectin type III 378 459 IPR036116 GO:0005515
Car06g00294 762 MobiDBLite consensus disorder prediction 108 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00294 Car-Chr6 3223495 3227876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00294 129 753 PHD Gene Family AT3G24440 47.418 8.74e-178 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00294 - - gmx:100816128 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00294 06 3223495 3227876 Car08g01722 08 27037277 27045425 PCT