LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g00284	ATGTGCTTAACAGAAGCGGAGATGACAAGTCGATTAAAGGAAGATGAGAAAAATGAACGAATTATTCGTGGTCTTCTAAAACTTACACCCAATCGTAGATGCATTAACTGCAACAGCCTGGGACCGCAATATGTATGCACAAATTTCTGGACGTTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTTACACATCGAGTAAAATCTATTTCCATGGCTAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAAATATTTTTTAAAGAATGGGATCCACAAAGTCACTCTTTACCTGATAGCAGTAATGTTGACAGGCTTCGGGACTTTCTCAAGCATGTTTATGTGGATAGGAGATTCACTGGCGAGAGGTCCATTGACAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTATCTGAAAACAGGAGGGTGGAGGCATATCAGGGAGGACCTAAAAGTCCTCCATATGAGGACCCATATGAACGCCGTCACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGGTATGATCAAGAAAGGAATTATGGTGATTATAAGAGAAGCCCTGGTCGCCCACCAATAATCAATGACTGGCGTCGTGAAGATAGATTTGGGGATGGACGGAGATTTGAAGATCATAGAATATCTAATGGAAATAATAAGCTGGAAAGCCAATCTCCTGAGAGAGCCAAAGATCTGGATTCTTCAAGCCCACCACCTGTTGTCCGACCTGTTAGAGAAATTCTGGGAGAAAATGTAATACCTCTACGAATTAGTGAACCTCCCAAAGCAAACAATGGACAGGCTGCTAATGGCTCAGCACTCACACAGAGAATAGCATCTTCCAGTAGCTTGGCATCCAGCAATGGAACTTCTTCAGAAGTTAAGCTTGAGACTATCAAGAGCCTTATTGATTTTGATTACGATCCTGAACCACCTATTGCTCCATCAATTCCTCAAGCCACACAAACTACTGTGGCTCAACTTGTGAATCCAACAAATTCTGGTGATAACAATTGGGCCTCCTTTGATGTTGCACCTGAGGTAAAAGTATCTCAGGGTCTTTCAAATGTAAATCCACTTGAATCTATGCTGTCCCAGTTGTCAGCTCCATCATCTTTACCTGCTCAAGTTTCTGGAGCCCAAGGGCCTGTGGCGGGATCAGCTCTTACTGCTACTGCTGGAGCTCCAACTGTGAGCAGCTTCACAACATTCCCGGCTAGTGTTGCTTCACTAACATCTTCTGGAATGACAATGGCATCACCTCTTAATAATGCAGACCCGTGGCCTAGTTTGCAGTATCAGCAACCTTTGTTTACATCTACTGCTGGTCAGCCTACTGTTCAACAATCTACACTACCAGTAGGTGGAGCTTTGAATAATCAGGGGCATCCAAGCACACTAGTGCCACATGTCTCAAAGGTTGTCAACGAGGATAAATCTAGTGGTGCTTCACAGATATCTACTGTAGACATGAAACCAAATGGAAGAAATGAACTTCCTGAGGATCTATTCACTGTAAAATATTCATCCTTCCATTCTCCAGTCCCAAGCTGGCAAATGGGTGCACCACCTGGCATGGGCATCTCAGTTCAATATAATAATATGGTGTCCATGCCGGGTTTCCCACAACCGTCAAAATCTACAAATCCATTTGATGTAATCAACGAACCAACTCCAGTTCAAGCCCCAACTTTTCCTTCTATGTCATCTTTGCAAGGTGCTCTGCCTAGTGTAACACCCTCAGCTACAGTGCACACTTCACACATGGGTAATCAATCTCTTGCCTGGAATCCACCACACTCGTTATCATATGCACCAATGCTGCCTCCACAAGCACAAACTCATGCCTCAGCAATGGGACCAAGGGCATACGTGGAGCAGCAGATACCCACTAACATGCCAATGCCAAGGCATCAAGGAATTGGAACTTTTGGTACCGAGGGAGCTGCTTTTGGCTTCTCTAATATAGATCAGCAGCTGACTGGCAGGTTGTCAACCTCTGCCACCTTAAACCCCTTCCCAGCTGCAGGAGGTAATCCATTCGGATGA	2085	0.4451	MCLTEAEMTSRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKEIFFKEWDPQSHSLPDSSNVDRLRDFLKHVYVDRRFTGERSIDKPPRVKGDKDDLSENRRVEAYQGGPKSPPYEDPYERRHSDRSSPGGRSPGYDQERNYGDYKRSPGRPPIINDWRREDRFGDGRRFEDHRISNGNNKLESQSPERAKDLDSSSPPPVVRPVREILGENVIPLRISEPPKANNGQAANGSALTQRIASSSSLASSNGTSSEVKLETIKSLIDFDYDPEPPIAPSIPQATQTTVAQLVNPTNSGDNNWASFDVAPEVKVSQGLSNVNPLESMLSQLSAPSSLPAQVSGAQGPVAGSALTATAGAPTVSSFTTFPASVASLTSSGMTMASPLNNADPWPSLQYQQPLFTSTAGQPTVQQSTLPVGGALNNQGHPSTLVPHVSKVVNEDKSSGASQISTVDMKPNGRNELPEDLFTVKYSSFHSPVPSWQMGAPPGMGISVQYNNMVSMPGFPQPSKSTNPFDVINEPTPVQAPTFPSMSSLQGALPSVTPSATVHTSHMGNQSLAWNPPHSLSYAPMLPPQAQTHASAMGPRAYVEQQIPTNMPMPRHQGIGTFGTEGAAFGFSNIDQQLTGRLSTSATLNPFPAAGGNPFG	694

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g00284	694	MobiDBLite	consensus disorder prediction	133	254	-	-
	Car06g00284	694	SMART	arf_gap_3	19	137	IPR001164	GO:0005096
	Car06g00284	694	MobiDBLite	consensus disorder prediction	133	153	-	-
	Car06g00284	694	PRINTS	HIV Rev interacting protein signature	50	67	IPR001164	GO:0005096
	Car06g00284	694	PRINTS	HIV Rev interacting protein signature	31	50	IPR001164	GO:0005096
	Car06g00284	694	PRINTS	HIV Rev interacting protein signature	68	89	IPR001164	GO:0005096
	Car06g00284	694	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	19	137	IPR001164	GO:0005096
	Car06g00284	694	MobiDBLite	consensus disorder prediction	204	229	-	-
	Car06g00284	694	PANTHER	ARF GTPASE ACTIVATOR	8	694	-	-
	Car06g00284	694	SUPERFAMILY	ArfGap/RecO-like zinc finger	18	130	IPR037278	-
	Car06g00284	694	Pfam	Putative GTPase activating protein for Arf	20	131	IPR001164	GO:0005096
	Car06g00284	694	PANTHER	ARFGAP/RECO-RELATED	8	694	IPR044820	GO:0005096
	Car06g00284	694	CDD	ArfGap_AGFG	19	129	-	-
	Car06g00284	694	Gene3D	Arf GTPase activating protein	8	138	IPR038508	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g00284	Car-Chr6	3134007	3141808	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g00284	19	129	C2H2 Transcription Factor Family	AT4G21160	31.624	1.63e-11	64.3