Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00276 ATGAAAGGTGATGCAGATTCAGGTGCCTTGGGAGCCAAGACAGCAAGAGCTTGTGATAGCTGTTTAAGAAGAAGAGCTCGTTGGTTTTGTGGAGCTGATGATGCTTTTCTTTGTCATGGTTGTGACACTTTGGTTCATTCTGCAAATCAATTAGCAAGTAGACATGAAAGGGTTCGTCTTCAAACTGCTTCTGCTAAAGTTACAACAGCACAAGCATGGCATAGTGGATTCACAAGAAAAGCAAGAACGCCACGTCATCACAACAAGAACCTTTTACTTCAACAAAAACAACAACGTCTTAAGGAAAAAGTGCTTTTCAATACTAGTGTTTTTCTTCCTCTTGTGCCTGAGATTGGAGGTGAAGAAGAACATGAGCCTGCACTTGTAGTTGATGATCATgaggcagaggaggaggaagaggagcagTTGATGTGTCGTGTGCCGGTTTTCGATGTCGACCCTTTTGATTTAGAGACATGTAATCTGAAAAATGATGCAGCTGATTTTGAAGAAATGTGTGATTTGGATAGTTTTGTTGAGTTTGATGTTGATCTTGCTGAGTTTGCAGCTAATGTTGAAAGTTTACTTGGTGTTCATGAGAATTCAACAACACAAGTGTTTGATTATAAACAAGAGAATAATGAAATGGATGCATCAAAAAATGAAATGTTGAAAGTTAAGGATGAAGAACTTGATGATTTGGAATCAGTTTTTGATATGACAAGTGATGAAGTTTTTCAATGGAATATTGATTGTAATAATGAAACAGTTGCACAAGAAGAGAAGGAGTGTGTAGTTGGAAGTTTTGATGCTAAAGAAGAAACAAAGAGAGAGAGATTTTTGAGATTAAACTATGAAGATGTTATTAGTGCTTGGAACATTCAAGGCTCTCCTTCTCCATGGACTACTGGAaaccctcctaagttcatctctcatgatgattgctggcaaaacttcttgGGTCCAAGTGGTGTGGATGAAGAAGTAAGAAGCTTAAGGGGACAATTAATAGGAAATATTAATGGAGATGGTGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAAAGAAGAACTCGTTTATTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGTCGTTTTGTTAAGAGAACAACATGTTTTGCTGGAACTACTACCACTTCTTTTCCAACTTACCAACACTGA 1218 0.3481 MKGDADSGALGAKTARACDSCLRRRARWFCGADDAFLCHGCDTLVHSANQLASRHERVRLQTASAKVTTAQAWHSGFTRKARTPRHHNKNLLLQQKQQRLKEKVLFNTSVFLPLVPEIGGEEEHEPALVVDDHEAEEEEEEQLMCRVPVFDVDPFDLETCNLKNDAADFEEMCDLDSFVEFDVDLAEFAANVESLLGVHENSTTQVFDYKQENNEMDASKNEMLKVKDEELDDLESVFDMTSDEVFQWNIDCNNETVAQEEKECVVGSFDAKEETKRERFLRLNYEDVISAWNIQGSPSPWTTGNPPKFISHDDCWQNFLGPSGVDEEVRSLRGQLIGNINGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTTCFAGTTTTSFPTYQH 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00276 405 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Car06g00276 405 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 394 - -
Car06g00276 405 CDD Bbox1_BBX-like 17 60 - -
Car06g00276 405 SMART bboxneu5 13 60 IPR000315 GO:0008270
Car06g00276 405 Coils Coil 209 229 - -
Car06g00276 405 ProSiteProfiles CCT domain profile. 346 388 IPR010402 GO:0005515
Car06g00276 405 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 394 - -
Car06g00276 405 Pfam CCT motif 346 388 IPR010402 GO:0005515
Car06g00276 405 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00276 Car-Chr6 3057822 3059517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00276 7 388 C2C2-CO-like Transcription Factor Family AT1G25440 42.396 1.03e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Car06g00276 zf-B_box 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00276 - - vun:114176987 426.402