Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00275 ATGACAAATAATCAAAGGAAAAAGGAGAAAAAAGGAACAAAAGTTTCAAAAGGAAAAGAAAAGGTTGAATCTACAGATGGAAAAGACATTTCAAAATATTTCAGGAAAGTTCGAATTATATACTCAGATCCATATGCGACAGATAATTCAAGTGATGAAGATAAAGTTGATAATACTAATAGCGTAATGCCAACGGTTAAGAGAGTTACGAAAGAGATTTTGATTCCAAAGTTGGAATCGAGTAGCAAACTATACATGAAAGAAGGAAACCGAAAAACTGTTTCTACAAGCAAGTACAGAGGTGTTCGACGTAGGAAATGGGGAAGATATTCTTGTGAGATTCGTGATCCATTTCTAAAGAAACGAGAGTGGCTTGGTACTTTTGATACTGAAGAACAAGCTGCTTTAGTTTATAAGAAAAAAAAAGATGAGTTTGAGAAAAGAAAAGCTTTATTGCATTTGAAGAATTTCAAACAAGATGATTTTGAGATTGATCTCAACTGCAAGGCACAAGGAAAAGGGTGTGGTGGTGGTAATAATTTTGATGATTCATCTGATGATGATGACAACGTTGGTGGTGGTAGTTCACATCATAATATTATGGATGTTCAAGGTAACAGTTAA 624 0.3381 MTNNQRKKEKKGTKVSKGKEKVESTDGKDISKYFRKVRIIYSDPYATDNSSDEDKVDNTNSVMPTVKRVTKEILIPKLESSSKLYMKEGNRKTVSTSKYRGVRRRKWGRYSCEIRDPFLKKREWLGTFDTEEQAALVYKKKKDEFEKRKALLHLKNFKQDDFEIDLNCKAQGKGCGGGNNFDDSSDDDDNVGGGSSHHNIMDVQGNS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00275 207 MobiDBLite consensus disorder prediction 177 207 - -
Car06g00275 207 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Car06g00275 207 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Car06g00275 207 Gene3D AP2/ERF domain 97 159 IPR036955 GO:0003700|GO:0006355
Car06g00275 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 90 190 - -
Car06g00275 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 25 81 - -
Car06g00275 207 ProSiteProfiles AP2/ERF domain profile. 98 158 IPR001471 GO:0003700|GO:0006355
Car06g00275 207 SUPERFAMILY DNA-binding domain 97 152 IPR016177 GO:0003677
Car06g00275 207 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Car06g00275 207 CDD AP2 97 160 IPR001471 GO:0003700|GO:0006355
Car06g00275 207 MobiDBLite consensus disorder prediction 1 27 - -
Car06g00275 207 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 90 190 - -
Car06g00275 207 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 81 - -
Car06g00275 207 Pfam AP2 domain 97 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00275 Car-Chr6 3048936 3049847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00275 31 150 AP2-EREBP Transcription Factor Family AT1G68550 43.382 4.40e-22 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g00275 AP2 1.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00275 - - cam:101510667 261.536