Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00269 ATGGCGACGCCGTTGGATGGAGGAGGAGGAGTGGCGGTTCTATCGAATCCTTTGAACAAGGTTGATTCCTCATCGGCTCTCAATGGCGGTTTGAAGTGCTCCAAACTCGACTCGCCAATTTTGATTTTTTTGTTCTTTCATAAGGCGATTCGGAGTGAGCTTGATGCTTTGCACAGATTAGCCATTGCATTCGCCACTGATAATAATCGCTCTGATATTCAGCCACTCTTTGAACGCTACCATTTCCTCAGTTCCATTTATAGACACCACTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTCTAGATAGACGTGTGAAGAATGTAGCACAAACATATTCTCTTGAGCACAAGAGTGAAAGCAATCTTTTTGATCATCTCTTTGAGCTGTTAAATTCTTCCATCCAGAATGATGAAAGTTTTCCAAGAGAATTCGCATCTTGCACAGGAGCTTTGCAGACATCAGTTAGTCAACACTTGGCAAAGGAAGAGGAACAGGTATTTCCTTTGCTTATTGAGAAGTTCTCTCTTGAGGAACAAGCATCCTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTAAATATGATGGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTACGAAATTTCTTAATCAAGATTGTGCCACAGGAAAAGCTTCTTCAAAAGGTTGTTTTTACCTGGATGGAAGGAAGTAGTGTTAACACAATCCAAAGTAGGGCAGATCATTCTCAAGTTCAATGTAGTTGTAGCCCATTAACCCATAAGGTTGGAAGACTAAATTGTGTATGCGAGTCCACGACAATTGGAAAAAGGAAACATTTTGGATCTATGCTAGATGTTTCTGATGCCACCGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAAAAGGAGTTAGGCGAGATAGCAGTGGAGACCAGAAAGATACAGCACTCTGGAGATTTTACTAACATATCGGCTTTTAATGAAAGATTGCAGTTCATTGCCGACGTTTGCATATTTCATAGTATTGCCGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAACTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTGTTTGATTGAAAGTATTCTAAGTGAAGGAGCATCATCTAATTCAGAAGCTGAATTTTATTCCAAGTTATGCTCACATGCTGATCATATAATGGAAACCATACAGAAGCATTTTCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGACAATGTGAACTTCTGTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGAGAGTCCTACCATGGTTGGTAGGATCTTTTACTGAAGAAGAAGCAAAGATGTTTCTGAGAAATATGCAATTAGCAGCTCCAACAACAGATTCTGCTCTAGTCACACTCTTCAGTGGTTGGGCATGCAAGGCTCGTAGTGAAGGCCTGTGTTTGTCTTCTGACACATCAGGTTGCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAAATATCGATCGGCCATCCTGTGCTTGTTCTTCTGCATCATCTGGCAGACATTGCTCCGTAATACTCGAGACGGATGGCAACAAAAGACCAGTCAAGCGAAATGCATTAAAGCTGCACAATGGAGATGGACCTGCAACTTCAGAGACGGAAAGTATCCAGAAACAGTGCTGTAGTCCTCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAACAGTAACAATTTGGGTCTGAGTTCTATTTCTACAGCCAAGTCCTTACGCTCTCTGTCTTTCAGCTCTTCTGCTCCATCTCTTAATTCCAGTCTTTTCATATGGGAACCTGCGAGCAGCTCATGTGATGTTGGCTCTGCGGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGTAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGATGGTGACGAGACAACGATTCGGCAATTTAGCGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATCGTATTTCCAGCACTAGAATCCAAAGAGGCCCTTCATAACGTGAGCCATTCATACATGTTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCCAGTGTTCTTTCTGAGTTTTCTGTCCTTCATGAAACCCTGCAGATGACCCATATGGTAGAGGATTTGAGTGATAGTAATTTTGGAACTTCTGAAGCCAATATTAGTGACGATGTCAAGAAGTATAACGAATATGCAACAAAGCTTCAGGGGATGTGTAAATCCATAAGAGTGACCCTGGATCAACATCTTTTCAGGGAAGAGCGTGAACTGTGGCCATTATTTGGGAGACATTTCAGTGTGGAAGAACAAGACAAGATAGTAGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAGTCAATGTTACCGTGGGTAACTTCTGCACTTACTCAGGATGAACAGAATAAAATGATGGATACATGGAAGCAGGCAACTAAGAATACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGACAGTCCAGCATCTATAGCACAGACAGAAACATCGGATCATAGCACTTCTCATATAGGTTCTGAATATCAGGAAACCTTGGACCTCAATGATAAAATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAGCTTGAGTCAGAGATCCGAAAGGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCGTATCTCGTGCAGAATCTTTTGACAAGTCGCTGGATAGCTGCCCAGCAGAAATCACCTAAATCTCCAGCCGAAGGATCATCTGATGGTGGAGAAATAGAAGGACACTCACCATCATTTCGGGACCCAGTGAAACTTGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAACAACATCTGAAATGATGTGTATGCGCTGCCTGAATATACAGGCAATTGGACCTATATGCATGACACCTTCTTGTAATGCACTTTCAATGGCAAAGTACTATTGCAGCATATGCAAATTTTTTGATGATGAAAGGAATGTATACCATTGCCCATTTTGCAATTTATGCCGTGTTGGACGAGGGCTTGGGATTGATTATTTTCACTGCATGAAATGCAATTGCTGCCTGGGGATTAAATCATCATCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGACGACTTATTCACGTCAAGTGCTACAGTTAGAGCTCTGCCTTGTGGCCACTACATGCATTCTGCTTGCTTTCAGGCATACACTAGTAGTCACTACACGTGTCCGATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGCATGCTCGATGCGTTATTGGCTGCGGAGGAGCTCCCTGAAGAATATAGGAGCCGCCATCAGGACATACTTTGCAACGACTGTGATCGAAAGGGTGCTTCACGCTTCCACTGGTTGTATCACAAATGTAGATTTTGTGGCTCTTACAATACTCGGGTGATCAAGCGTGAGACACATTCCAGCAGCTCCTAG 3708 0.4172 MATPLDGGGGVAVLSNPLNKVDSSSALNGGLKCSKLDSPILIFLFFHKAIRSELDALHRLAIAFATDNNRSDIQPLFERYHFLSSIYRHHSNAEDEVIFPALDRRVKNVAQTYSLEHKSESNLFDHLFELLNSSIQNDESFPREFASCTGALQTSVSQHLAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRNFLIKIVPQEKLLQKVVFTWMEGSSVNTIQSRADHSQVQCSCSPLTHKVGRLNCVCESTTIGKRKHFGSMLDVSDATGTHPIDEILLWHNAIKKELGEIAVETRKIQHSGDFTNISAFNERLQFIADVCIFHSIAEDKVIFPAVDGELSFFQEHAEEESQFNDFRCLIESILSEGASSNSEAEFYSKLCSHADHIMETIQKHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSFTEEEAKMFLRNMQLAAPTTDSALVTLFSGWACKARSEGLCLSSDTSGCCPAQRLSDIEENIDRPSCACSSASSGRHCSVILETDGNKRPVKRNALKLHNGDGPATSETESIQKQCCSPRSCCVPGLGVNSNNLGLSSISTAKSLRSLSFSSSAPSLNSSLFIWEPASSSCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETTIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISSVLSEFSVLHETLQMTHMVEDLSDSNFGTSEANISDDVKKYNEYATKLQGMCKSIRVTLDQHLFREERELWPLFGRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKDSPASIAQTETSDHSTSHIGSEYQETLDLNDKMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKSPAEGSSDGGEIEGHSPSFRDPVKLVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKTTSEMMCMRCLNIQAIGPICMTPSCNALSMAKYYCSICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSSSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTSSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRSRHQDILCNDCDRKGASRFHWLYHKCRFCGSYNTRVIKRETHSSSS 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00269 1235 Gene3D - 1191 1233 - -
Car06g00269 1235 MobiDBLite consensus disorder prediction 956 979 - -
Car06g00269 1235 SUPERFAMILY RING/U-box 1117 1166 - -
Car06g00269 1235 ProSiteProfiles Zinc finger RING-type profile. 1120 1162 IPR001841 -
Car06g00269 1235 SMART ring_2 1120 1161 IPR001841 -
Car06g00269 1235 CDD Hr-like 646 806 - -
Car06g00269 1235 ProSiteProfiles Zinc finger CHY-type profile. 984 1053 IPR008913 GO:0008270
Car06g00269 1235 Pfam Hemerythrin HHE cation binding domain 296 430 IPR012312 -
Car06g00269 1235 Pfam Hemerythrin HHE cation binding domain 44 171 IPR012312 -
Car06g00269 1235 Pfam Hemerythrin HHE cation binding domain 644 807 IPR012312 -
Car06g00269 1235 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 26 1234 - -
Car06g00269 1235 CDD Hr-like 299 428 - -
Car06g00269 1235 SUPERFAMILY Zinc hairpin stack 1057 1113 IPR037275 -
Car06g00269 1235 Pfam Ring finger domain 1119 1161 IPR001841 -
Car06g00269 1235 SUPERFAMILY CHY zinc finger-like 984 1047 IPR037274 GO:0008270
Car06g00269 1235 ProSiteProfiles Zinc finger CTCHY-type profile. 1056 1119 IPR017921 -
Car06g00269 1235 CDD RING-H2_Pirh2 1119 1162 - -
Car06g00269 1235 Gene3D nmb1532 protein domain like 299 446 - -
Car06g00269 1235 Gene3D nmb1532 protein domain like 36 189 - -
Car06g00269 1235 Pfam Zinc-ribbon 1167 1224 IPR039512 -
Car06g00269 1235 Pfam CHY zinc finger 991 1066 IPR008913 GO:0008270
Car06g00269 1235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1164 IPR013083 -
Car06g00269 1235 CDD Hr-like 42 169 - -
Car06g00269 1235 Gene3D nmb1532 protein domain like 640 882 - -
Car06g00269 1235 PANTHER CHY ZINC FINGER PROTEIN 26 1234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00269 Car-Chr6 2857128 2870018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00269 38 1230 C2H2 Transcription Factor Family AT3G18290 69.224 0.0 1676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00269 K16276 - gmx:100801725 2197.55