Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00254 ATGAACAATATACCATTTTCTCATATGGACAAACTCTCAATCAACTTTTGCATTGCATACTTTCTTATTTTTTCTCTCTTGTTTGTGCATGGCAAAGAATTATCATGCAATCAAACACCATACCCTCATGTGTGTAACCATTACATTGGAACCACAACAACCAACACTTTATCAACCCTAGATTCTTCTTCTTTCCATGATATGGCCCTTAAGGTCACCATGGAGCAAGCCATTGAGGCCCACAAACTTGTGTCAACCATGGAATTAAATAATAATTTCAAAGACAAGAGAGCCAAGTCAGCATGGGAGGATTGTTTAGAGCTTTATGAGGATACAATTTATCAACTCAAACGCTCAATAAACTCAAACAATATAAATGACAAATTAACTTGGCAAAGTGCTTCCATTACCAACCATCAAACTTGCCAAAATGGTTTCATTGATTTTAACCTTCCCTCTCAACTAAACTACTTTCCATCCATGTTAAGTAACTTCTCTAAATTGCTTAGCAATTCCTTGTCCATTACTAACACCATAGCTtcctcgtcccactctttgtcctcgacctcgacctcgtcctcgtcatcgtcatcgtcatcgaccAATAAACAAAATGGAGGGAGAAGGTTATTATCAGATGGATTTCCCAATTGGGTTTCATTTTCAGATAGAAAGCTTCTTCAAGAAACAATTGAAGCTGATATTGTTGTGGCACAAGATGGAAGTGGAAACTACAAAACAATATCGGAGGGTGTTGCTGCAGCTGCAAAACTAAGAGGAAAAGGAAGAGTTGTTGTTTATGTGAAAAGAGGTGTTTATAAAGAGAATGTTGATGTTAAAAAAACAGTGAAGAATTTAATGATTGTTGGAGATGGAATGGATTCAACAATTATTACTAGTAATCACAATGCTCAACATGGCTATACTACTTTTCGTTCAGCTACTTTTGGTATTATGGGTGATGGTTTCATAGCAAAGGACATGACTTTTGAAAACACAGCCGGACCACAAAATCATCAAGCAGTGGCTCTACGTTCTGGCGCCGATTACTCTGTATTTTATCGTTGCGCCTTCAAAGGTTATCAAGACACATTATATGTCTACGCTCAACGTCAATTCTACCGTGATTGTAACATCTACGGAACCGTTGATTTCATCTTTGGTAACGCCGTTACAGTCCTTCAAAACTGCAACATCTTTGTTAGAAAACCAATGGGGAACCAACAGAACACTGTAACGGCACAAGCAAGAACAGATCCAAATGAAAATACCGGTATTATTATTCATAACTGTCGAATAACTGCTTCAAATGATTTAAAACCGGTTCAGAATTCAGTGAAAACATTTCTTGGAAGACCGTGGCAAAAATATTCAAGAACTGTTGTTATGAAAAGTAATCTTGATGGTTTGATTAATCCTAAAGGTTGGTCTGTATGGAATGGTGGTTTTGCTTTGAGTACACTTTATTATGGTGAGTATATGAATATTGGTGCCGGTGCTAATACCGGTGGACGAGTTCAATGGCCAGGGTTTCATCTTATTACTCAGTCTTCTGAGGCTGCAAAATTTTCTGTTTCTAATTTTTTGGCTGGTGGATCTTGGATTTCTAGTACTGGTGTGCCGTTTGATGCAGGTTTGTGA 1641 0.3571 MNNIPFSHMDKLSINFCIAYFLIFSLLFVHGKELSCNQTPYPHVCNHYIGTTTTNTLSTLDSSSFHDMALKVTMEQAIEAHKLVSTMELNNNFKDKRAKSAWEDCLELYEDTIYQLKRSINSNNINDKLTWQSASITNHQTCQNGFIDFNLPSQLNYFPSMLSNFSKLLSNSLSITNTIASSSHSLSSTSTSSSSSSSSSTNKQNGGRRLLSDGFPNWVSFSDRKLLQETIEADIVVAQDGSGNYKTISEGVAAAAKLRGKGRVVVYVKRGVYKENVDVKKTVKNLMIVGDGMDSTIITSNHNAQHGYTTFRSATFGIMGDGFIAKDMTFENTAGPQNHQAVALRSGADYSVFYRCAFKGYQDTLYVYAQRQFYRDCNIYGTVDFIFGNAVTVLQNCNIFVRKPMGNQQNTVTAQARTDPNENTGIIIHNCRITASNDLKPVQNSVKTFLGRPWQKYSRTVVMKSNLDGLINPKGWSVWNGGFALSTLYYGEYMNIGAGANTGGRVQWPGFHLITQSSEAAKFSVSNFLAGGSWISSTGVPFDAGL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00254 546 PANTHER PECTINESTERASE 27 545 - -
Car06g00254 546 Gene3D - 228 546 IPR012334 -
Car06g00254 546 Pfam Pectinesterase 234 531 IPR000070 GO:0030599|GO:0042545
Car06g00254 546 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 182 IPR035513 -
Car06g00254 546 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 179 IPR035513 -
Car06g00254 546 SUPERFAMILY Pectin lyase-like 231 545 IPR011050 -
Car06g00254 546 Pfam Plant invertase/pectin methylesterase inhibitor 35 175 IPR006501 GO:0004857
Car06g00254 546 ProSitePatterns Pectinesterase signature 2. 379 388 IPR033131 -
Car06g00254 546 MobiDBLite consensus disorder prediction 183 211 - -
Car06g00254 546 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 27 545 - -
Car06g00254 546 ProSitePatterns Pectinesterase signature 1. 260 279 IPR018040 -
Car06g00254 546 TIGRFAM PME_inhib: pectinesterase inhibitor domain 15 179 IPR006501 GO:0004857
Car06g00254 546 SMART PMEI_2 24 175 IPR006501 GO:0004857
Car06g00254 546 MobiDBLite consensus disorder prediction 183 208 - -
Car06g00254 546 CDD PMEI-like_3 34 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00254 Car-Chr6 2619526 2622373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00254 35 546 Carbohydrate Esterase AT1G23200 52.083 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00254 - - gmx:100816802 793.882