Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00252 ATGTCTATCCATTTCCCCTTCATTGCATCCATAATATTCTCCATAATCTTTTTCTCAACAACTTTGCCACAATCCAACTCACAAAAAAATGATACCTTCTCTATTTGTAGCCAATCCTATTTCACATGTGGAACACTCACAAACGTGTCTTTTCCTTTTTGGGGAACAAACCGACCAAATTTTTGTGGAAACAATGAATTCAAACTCACTTGTATGCATAGTCAAAACACTACCTCTATTCAAATCGGTTCACAAAAATTCAATATACTAAACATTAACCAAACATCTTCTACCATGAAAATGGTTAGAACAGATCTTGTTTATGATTTTTGTTCTTCAAATTTCACCAACACTTCTTTGAATGGAAGTCCCTTTACTTTTCTTCCAACCGTTCAAAATGTTACTATATTCTACGATTGCCCAATTGAGAATAGTTCAATAGTTGGAAACATACAAAAATTTACTTGTGTAAAAAATGGTACCAATAGACATGCTTTTTATTTGATTAATAATGAAACTAAGATGCAGGGTTGTGGTGTTAGTGTTGAAGTTCAAGTTTCTAAGGATGTTGTTTGGGACAGTGAGGGTGGAATTGGTGCTCTGAACAAAGCCTTGGATGAAGGGTTTGATGTGAAGTATGATGAAGGTGTAGGGTGGTCTTCTAAGTGTACAGTGTGTAGAGAATCTGGAGGAACATGTGGAACTAATCAGAATGATTCTGCTCAGTTTTCTTGTTATTGTCCTGCTGGAAGTGGAACTCATGCTGCAATGTGTCCTGCTCATAAAAGTGGAAAGAAGAGCAAAGTGTTGAAGCTGGTTTTAGGTTTCGTAGCTACTGGAATGTTACTACCTCTAATTGCTGTAATAATATGTCGAAACAAAGCTAAAATATGGAAGATTATATTAACACAATTCAGCAAAATAacaaggaacaatcaacacatagaagccttccttgaaagtcaaggtcctcttaatctaaaaagatataatttctctgatataaagaaaatgactgaatctttcaaagttaaactcggagaaggtggttatggttctgtatacaaaggaaaattactcaatggttgttctgttgcagtaaaagtacttaatgaatcaaaaggaaatggagaagaattcatcaatgaagttgcaagtatatgcaaaacatcgcacgttaatgttgtcactcttctcggattttgtcttgacggaaccaaaaaagctctcatatatgagtttatgtcaaatggttccctcgaaaagtacatttacaatcacaacaaagaatctgaaacgatgaaaactaatacctcatcgttgagctgggagaatttacaacaaattgcaataggaatagctcgaggactcgagtacttgcataaaggatgcaacactaggattctacatttcgacataaaaccacacaacattcttttggacgaaaattatcgtccaaaaatatccgattttgggcttgctatgctaagcacaagagacgagagtattatttcaatgtcgaatgctagagggacagttgggtacgtagctcctgaagttttcaacaaaagtttcggaggcgtttcacataaatctgatgtttatagttatggaatgatgctgttagaaatggttggaggacgaaagaaAAACGTTAACATTGTAGAAGGTAGTCGCTCGAGCGACTTATATTTTCCGCATTTGGTAGTTTATAAGAAGCTTGAGGAAGGAAGTGATTTGGAAGTGGATGGAATAATGACAACAGAAGAAAATGAGACAGCTAAGAGATTAACTATGGTTGGTTTGTGGTGTATTCAAACAATTCCATCTCATAGACCAACGATTAGTAAAGTGATTGATATGTTGGAAGGTGGCTTGGAATCTTTGGAAATGCCACCAAAACCTGTTATGTATTCTCCTCCAAGATCAATACCAGAATTTTCTACTACATCAAGATCATTGGATAGTGAAGTGTCTAATTAA 1983 0.2259 MSIHFPFIASIIFSIIFFSTTLPQSNSQKNDTFSICSQSYFTCGTLTNVSFPFWGTNRPNFCGNNEFKLTCMHSQNTTSIQIGSQKFNILNINQTSSTMKMVRTDLVYDFCSSNFTNTSLNGSPFTFLPTVQNVTIFYDCPIENSSIVGNIQKFTCVKNGTNRHAFYLINNETKMQGCGVSVEVQVSKDVVWDSEGGIGALNKALDEGFDVKYDEGVGWSSKCTVCRESGGTCGTNQNDSAQFSCYCPAGSGTHAAMCPAHKSGKKSKVLKLVLGFVATGMLLPLIAVIICRNKAKIWKIILTQFSKITRNNQHIEAFLESQGPLNLKRYNFSDIKKMTESFKVKLGEGGYGSVYKGKLLNGCSVAVKVLNESKGNGEEFINEVASICKTSHVNVVTLLGFCLDGTKKALIYEFMSNGSLEKYIYNHNKESETMKTNTSSLSWENLQQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDENYRPKISDFGLAMLSTRDESIISMSNARGTVGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMVGGRKKNVNIVEGSRSSDLYFPHLVVYKKLEEGSDLEVDGIMTTEENETAKRLTMVGLWCIQTIPSHRPTISKVIDMLEGGLESLEMPPKPVMYSPPRSIPEFSTTSRSLDSEVSN 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00252 660 Gene3D Transferase(Phosphotransferase) domain 1 415 631 - -
Car06g00252 660 SUPERFAMILY Protein kinase-like (PK-like) 321 622 IPR011009 -
Car06g00252 660 Pfam Wall-associated receptor kinase galacturonan-binding 36 102 IPR025287 GO:0030247
Car06g00252 660 ProSiteProfiles Protein kinase domain profile. 340 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00252 660 Pfam Protein tyrosine and serine/threonine kinase 342 622 IPR001245 GO:0004672|GO:0006468
Car06g00252 660 MobiDBLite consensus disorder prediction 632 660 - -
Car06g00252 660 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 656 IPR045874 GO:0004672
Car06g00252 660 MobiDBLite consensus disorder prediction 643 660 - -
Car06g00252 660 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Car06g00252 660 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 6 656 - -
Car06g00252 660 Gene3D Phosphorylase Kinase; domain 1 302 414 - -
Car06g00252 660 SMART serkin_6 340 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00252 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Car06g00252 660 Pfam Wall-associated receptor kinase C-terminal 171 249 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00252 Car-Chr6 2596227 2600926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00252 35 650 Receptor kinase-like Gene Family AT1G66910 39.876 4.82e-146 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Car06g00252 PK_Tyr_Ser-Thr 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00252 - - gmx:100816285 952.97