Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00227 ATGCTTAGAAGAAAACACCTCACAATTTTTTCATCTTTCAAACTTTCTCAACAAATTCCTCACAAATTAAACCCAAATGCACTTCCACATCCAATACACCACAATTTCCCCCAGATTTCAAACAATTTTAGGGTTTTACTTTTCCATCTCTATGGAACCCAAGATTCAAAATTTCCCGAATACGAGATGCCTTCAGTTACATGGGGTGTGATTCAAGGTCGAAAAGAGAAGCTTGTTTCGCGTGTCATCGTTTTCGATTACCTCAAGGGTTTAGGAATTATTCCTGATGAGTTGCAGGATTTGGAGCTTCCTTCAACCGTTGATGTCATGAGGGAACGCGTTGAGTTTCTTCAGAAATTAGGTTTAACTATTGATGACATTAATCAGTATCCTTTGATGTTGGGATGTAGTGTTAGAAAAAACATGATTCCTGTTTTAGGGTATTTGGAAAAAATTGGGATTTCAAGGTCTAAACTTGGTGAATTTGTTAAGAATTATCCACAAGTTTTGCATGCTAGTGTTATTGTTGAACTTGCTCCTGTTATTAAGTTCCTTAGAGGACTTGATGTGGAGAAGGATGATATTGGGTTTGTGTTGCAAAAATATCCTGAACTTCTAGGGTTTAAGCTTGAAGGTACTATGAGTACTTCAGTGGCTTATCTTGTTAGTATTGGTGTTAGTCCTAGGGATATTGGTCCAATGGTTACACAGTATCCTTATCTTTTAGGGATGAGAGTTGGTACTATGATAAAGCCTCTTGTTGATTACTTGGTCAATTTAGGGTTACCTAAGAAGATTCTAGCTAGGATGTTTGAGAAAAGAGCTTATATACTTGGTTATGATCTTAAAGAGACTGTGGAACCGAATGTTGATTGTTTAATTAGTTTTGGTTTGAGAAAGGAATGTTTGCCTTCGGTTATTGCTCAGTATCCACAGATTATTGGGTTGCCTCTTAAGGCTAAATTGTCTTCACAACAATATTTTTTCAGTTTGAAGCTTAAGATTGATCCTGAAGGGTTTGCAAAGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCACCAAAATGTGATTATGAAGCCGGTTGAGTTTTTACTTGGTAGGGCAATACCGTCGCAGGATGTGGCTAGTATGGTGATCAAGTGTCCTCAGTTGGTTGCGCAGCGAGTCGAGCTCATGAAGAACAGTTATTTCTTCTTCAAGAGTGAAATGGGTAGACCCATAAAAGAGCTTGTGGAGTTCCCTGAATACTTTACTTATAGTTTGGAATCAAGGATTAAACCTAGATACCAGAGGCTTAAGAGTAAAGGGATAAAGTGTTCATTGAATTGGATGCTTAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGAAATTATATTGAAACCGAAAGTATAGGTCCTTCATTTTATATTGGTGGGAAATTAGAGCTACCAGGGAATGATATAGTTTCAGATGAGGAAGAGGAAAATGATGATGAAATGCTATACAGACGAACTGTTTCTCTTTAG 1515 0.3776 MLRRKHLTIFSSFKLSQQIPHKLNPNALPHPIHHNFPQISNNFRVLLFHLYGTQDSKFPEYEMPSVTWGVIQGRKEKLVSRVIVFDYLKGLGIIPDELQDLELPSTVDVMRERVEFLQKLGLTIDDINQYPLMLGCSVRKNMIPVLGYLEKIGISRSKLGEFVKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLVNLGLPKKILARMFEKRAYILGYDLKETVEPNVDCLISFGLRKECLPSVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFAKVVEKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLVAQRVELMKNSYFFFKSEMGRPIKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGNYIETESIGPSFYIGGKLELPGNDIVSDEEEENDDEMLYRRTVSL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00227 504 PANTHER EXPRESSED PROTEIN 45 487 - -
Car06g00227 504 SMART mt_12 376 407 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 SMART mt_12 408 439 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 SMART mt_12 160 191 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 SMART mt_12 196 227 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 SMART mt_12 304 336 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 SMART mt_12 341 371 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 SMART mt_12 232 263 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 Pfam mTERF 146 454 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 PANTHER CGI-12 PROTEIN-RELATED 45 487 IPR003690 GO:0003690|GO:0006355
Car06g00227 504 Gene3D Transcription termination factor 3, mitochondrial 109 250 IPR038538 -
Car06g00227 504 Gene3D Transcription termination factor 3, mitochondrial 251 464 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00227 Car-Chr6 2418461 2420254 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car06g00227 mTERF 2.3e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00227 K15032 - gmx:100809590 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00227 06 2418461 2420254 Car08g01653 08 26347522 26351134 PCT