Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00202 ATGGGGAAAAAGAAGAAGAGAGTTGCTTCGAAGGTTTGGTGTTATTACTGCGATCGCGAATTCGACGATGAGAAGATCTTGGTTCAGCATCAGAAGGCTAAGCACTTCAAGTGTCATGTATGTCATAAGAAGCTCTCTACAGCTGGTGGCATGTCCATTCACGTTCTCCAGGTTCACAAGGAAAACGTCACTAGGGTGCCAAATGCGAAACCCGGTAGAGAGAGCACAGATATTGAAATATATGGAATGCAAGGGATTCCGCCAGATGTGTTGGCTGCTCATTATGGAGATGAAGATGATGATGTTCCATCAAAGACAGCCAAGATAGATATCCCATCATCCCCATTTTTAGGTGGAATGGTGCCACCTCATATGGGTACCGGATATCCTCCTCGATCAACCTTGGGCACACTTCCACCAGTTTATAATCCTGCTGTACCACTGCCTCCTAATGCCTGGGGAATGGTTCCACCTCGACCTCAGCCCTGGTTTCCCCAGCCTCCATCTGCTTCAATTCCTCCTCCTGTTCCATACGCCCAGCAACCATTATTTCCTGTGCAGAATGTGAGGCCTCCATTGCCTTCAACTACTTCTCCTGCACTTCAAACTCAGATCACTCCTCCTGGACTTCCTACATCTACACCTTCTGTCCCAGTATCACAGCCTTTATTTCCTGTTGTTGGAAATAACCACACGACAACTCAAAGCTCACCATTTTCTGCTGCACCTCTGTCTTCAAGTATATCATCAGTTACTCAAGTGCTTTCTTCAAATGTCCCTGTTGATGCACATTTGGGTATCAACTCTTCTGTGACAAATAGTTATCAACCAATAGGGCTTCCAGGTGGGACAGCAAGTAACTCGCATTCTTATGCTTCTGGCCCAAATACCGGTGGTCCTTCAATTGGACCTCCCCCAGTAATCTCAAACAAAGCTCCTGCTTCTCAGCCTGCGACTAATGAAGTTTACTTAGTTTGGGATGATGAGGCTATGTCCATGGAGGAAAGAAGAATGTCTTTATCAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGTAATACATGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTATTCTTTCTGTTTTCAGATTCAGTTGTTTACACATATTTAA 1158 0.4482 MGKKKKRVASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMSIHVLQVHKENVTRVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGDEDDDVPSKTAKIDIPSSPFLGGMVPPHMGTGYPPRSTLGTLPPVYNPAVPLPPNAWGMVPPRPQPWFPQPPSASIPPPVPYAQQPLFPVQNVRPPLPSTTSPALQTQITPPGLPTSTPSVPVSQPLFPVVGNNHTTTQSSPFSAAPLSSSISSVTQVLSSNVPVDAHLGINSSVTNSYQPIGLPGGTASNSHSYASGPNTGGPSIGPPPVISNKAPASQPATNEVYLVWDDEAMSMEERRMSLSKYQVHDESSQVSHTTSVIHGVAFTSNQMSRLYSFCFQIQLFTHI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00202 385 MobiDBLite consensus disorder prediction 280 315 - -
Car06g00202 385 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Car06g00202 385 Gene3D Classic Zinc Finger 2 63 - -
Car06g00202 385 PANTHER ZINC FINGER PROTEIN 207 1 365 - -
Car06g00202 385 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 365 - -
Car06g00202 385 SMART c2h2final6 36 59 IPR013087 -
Car06g00202 385 SMART c2h2final6 12 35 IPR013087 -
Car06g00202 385 MobiDBLite consensus disorder prediction 280 297 - -
Car06g00202 385 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Car06g00202 385 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00202 1 375 C2H2 Transcription Factor Family AT1G30970 61.340 1.33e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g00202 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00202 - - gsj:114421245 588.956