Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00201 ATGCCTTTTGTGAAAGAAGACATGAAATGGAGAAGACCCAGAAACAACAAACCGGTTTCAGAAACGGATACCCGACCCATTTTACAATCCACTCGCTGCAAATCCACAATCTCCTCTCTTCTTCTCTCCACATTCTCCAATGAAACCACCAACAAAAAAACTAACTTTTCTGCTGCGGCGGCAACGTTCAGAGGTCTAGGGTGCAGCGCCGGTGCGTCTGAGCAGGTGTCGGTGCCGGCGGTGATTCGAGCGTCAGCAGATTGGGAAATgaagaagaagaagaagaaaacaaagaaaaagaagcagaagaggaagagtaagaaCGATGGTGTTGATTTTCAAGATGTTTGGTGTGCTCCTGGAATTGGGTTCTCACCAGATGTTGCTGCTTCTGTTGATTGTGTTGTTTCAAAGAGGAATGTCAATGTCTCTTCAACTTCAAGGCCTAAAATTGATCTTCATAAGATTACTCACACACAGATAATGGTGCTTCAAGGAAGCATACTAATGGGAGGACGGCGTGACCTTTTCCGAGACTGGAGACTAGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGCGAGAGAATTGGTAATGTCAATACAGGACTTAAAGAAGATGAGATGGAACCTTACATAACGAAGACTAAGCTTCAGATTTCGGATCAAGTAGACAAAAAGTGCAGCATTTGTCAGGAAGAGTATGAAGTGGATGATAAACTTGGGAGGCTTAACTGTGATCACTTGTATCACTTTCAATGTATACAACAATGGGTTGCACACAAAAATTTCTGCCCTGTGTGTAAGCACCAGGTTGCAGCACGACGCTGA 837 0.4134 MPFVKEDMKWRRPRNNKPVSETDTRPILQSTRCKSTISSLLLSTFSNETTNKKTNFSAAAATFRGLGCSAGASEQVSVPAVIRASADWEMKKKKKKTKKKKQKRKSKNDGVDFQDVWCAPGIGFSPDVAASVDCVVSKRNVNVSSTSRPKIDLHKITHTQIMVLQGSILMGGRRDLFRDWRLDVDNMSYEQLLELGERIGNVNTGLKEDEMEPYITKTKLQISDQVDKKCSICQEEYEVDDKLGRLNCDHLYHFQCIQQWVAHKNFCPVCKHQVAARR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00201 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 159 IPR045191 GO:0061630
Car06g00201 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 160 277 IPR045191 GO:0061630
Car06g00201 278 MobiDBLite consensus disorder prediction 1 19 - -
Car06g00201 278 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 4 159 - -
Car06g00201 278 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 160 277 - -
Car06g00201 278 SMART ring_2 230 270 IPR001841 -
Car06g00201 278 MobiDBLite consensus disorder prediction 1 28 - -
Car06g00201 278 ProSiteProfiles Zinc finger RING-type profile. 230 271 IPR001841 -
Car06g00201 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 276 IPR013083 -
Car06g00201 278 Pfam Ring finger domain 229 271 IPR001841 -
Car06g00201 278 SUPERFAMILY RING/U-box 211 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00201 Car-Chr6 2184451 2188100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00201 4 190 C3H Transcription Factor Family AT1G73760 34.201 2.83e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00201 - - cam:101510167 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01662 08 26465122 26468717 Car06g00201 06 2184451 2188100 ECH
Car06g00201 06 2184451 2188100 Car06g00201 06 2184451 2188100 ECH