Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00182 ATGGATATTGAGGAGGAGATTCGTTCTTTACAGCTTGACTCAGCAGAAGACAGTAATGGGGTGGTGAATCCAGAGGATGAGAAGCCAGATGTTGATAATTTTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCTCAGGCTGTTGAGGCCGAGCCAAAAGAAAAAGATACTGCTGTTCAAGACGAAGTTGAGCCAGAGATAACGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGATGCTGGAAAGTCTACAACAGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTACATGGCTTATATCATGGACACAAATGAGGAGGAGAGAGTAAAGGGAAAAACAGTTGAAGTTGGAAGAGCGCATTTTGAGACAGAGACAACAAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGCGGACAAACCCGTGAACATGTCCAGCTTGCAAAAACACTGGGTGTGGCTAAGCTGCTTGTTGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGTCAAAAGAAAGGTATGATGAGATCGAGTCAAAGATGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTTGTTTTTACCTATATCGGGGCTCATGGGTTCAAACTTAAAAACAAGAATGGATAAAAGCATTTGTTCATGGTGGGATGGGCCTTGCTTATTTGAAGCCCTTGATGGTATCGAAGTTCCTCTGCGAGATCCCAAAAGTCCTTTCAGGATGCCTTTAATTGACAAATTTAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTACTATTCGGGAGGGAGATACCCTTTTTGTCATGCCAAATAAGGATCAAGTAAAAGTCGTTGCTATATATATTGATGAAAATCGGGTTAAACGTGCTGGACCTGGTGAAAATTTACGGGTTCGATTATCTGGTATTGAAGAAGAAGACATACTATCTGGGTTCGTCTTGTCTAGTGTTGAAAATCCAATACCAGCAGTTACCGAGTTTGTTGCTCAGTTGGCAATCCTTGAATTAATGGACAATGCTATTTTTACTGCTGGATACAAGGCTGTTCTGCACATCCACTCTGTAGTTGAGGAATGTGAGATCGTTGAGCTATTGCAACAAATTGATCCAAAGACAAGGAAGCCTATGAAAAAGAAAGTTCTTTTTGTAAAGAATGGCGCTAATGTAATATGCCGTGTTCAGGTTAATAACACGATATGCATTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGAAAAGTCAATGCTCTTTGA 1494 0.4116 MDIEEEIRSLQLDSAEDSNGVVNPEDEKPDVDNFDKMDEDPKQEVQAQAVEAEPKEKDTAVQDEVEPEITKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLMGSNLKTRMDKSICSWWDGPCLFEALDGIEVPLRDPKSPFRMPLIDKFKDMGTVVMGKVESGTIREGDTLFVMPNKDQVKVVAIYIDENRVKRAGPGENLRVRLSGIEEEDILSGFVLSSVENPIPAVTEFVAQLAILELMDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTRKPMKKKVLFVKNGANVICRVQVNNTICIEKFSDFPQLGRFTLRTEGKTVAVGKVNAL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00182 497 Gene3D - 51 295 IPR027417 -
Car06g00182 497 Pfam Elongation factor Tu domain 2 315 381 IPR004161 GO:0005525
Car06g00182 497 CDD eRF3_II 302 383 - -
Car06g00182 497 CDD eRF3_C_III 389 497 - -
Car06g00182 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 306 IPR027417 -
Car06g00182 497 Gene3D Translation factors 390 497 - -
Car06g00182 497 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 392 495 IPR009001 -
Car06g00182 497 PRINTS GTP-binding elongation factor signature 75 88 IPR000795 GO:0003924|GO:0005525
Car06g00182 497 PRINTS GTP-binding elongation factor signature 154 164 IPR000795 GO:0003924|GO:0005525
Car06g00182 497 PRINTS GTP-binding elongation factor signature 170 181 IPR000795 GO:0003924|GO:0005525
Car06g00182 497 PRINTS GTP-binding elongation factor signature 214 223 IPR000795 GO:0003924|GO:0005525
Car06g00182 497 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 127 142 IPR031157 -
Car06g00182 497 MobiDBLite consensus disorder prediction 21 61 - -
Car06g00182 497 PANTHER TRANSLATION FACTOR 2 491 - -
Car06g00182 497 Pfam Elongation factor Tu C-terminal domain 388 496 IPR004160 -
Car06g00182 497 Gene3D Translation factors 300 385 - -
Car06g00182 497 SUPERFAMILY Translation proteins 294 387 IPR009000 -
Car06g00182 497 Pfam Elongation factor Tu GTP binding domain 71 273 IPR000795 GO:0003924|GO:0005525
Car06g00182 497 CDD EF1_alpha 75 295 - -
Car06g00182 497 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 71 300 IPR000795 GO:0003924|GO:0005525
Car06g00182 497 PANTHER BNAA06G12300D PROTEIN 2 491 - -
Car06g00182 497 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00182 Car-Chr6 2038235 2047668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00182 71 497 Eukaryotic Initiation Factors Gene Family AT5G60390 37.674 1.91e-96 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00182 K03267 - gmx:100793653 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00182 06 2038235 2047668 Car06g00182 06 2038235 2047668 ECH