Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00171 ATGGATTCAACTTCCTTTCATCCTCCTCCTCCTCCACCCACCACCACCGTTCCCTTCACTCTCGAACCGGCTGCTGACTACAACAATCACCACCACGCCGCTACTACCCACCCTCCTTATGCTGAGATGATATACAAAGCAATAGAGGCGTTGAAAGAGAAAGACGGGTCAAGCAAGAGAGCAATAGGAAAGTACATAGAGCAAGTGTACAGTGAAGTTCTACCACCACAACACAACACCATGTTAACGCAACACCTAAACCACTTGAAATCTGCTGGTCTTCTCATCATGTTCAAGAAATCTTACAAACTACCTTCCTCACTCCCTCCACCACCCACTATCCCTAGATCTCACCTCCCTTTCACTCCCATAACCCAAAGGGGCCGCGGTCGTCCCCCTAAACCCAAACCCCACCCCATACCCCCTTCACTTAACGACCCTGCACCTGATTTCGATAAACTAGGACCTCCCAAAATTGATGTGGGATCCACCTTCACTGTCAAAAGAGGCCGCGGACGTCCTCCTGGTACCACCAGATCTAGGTCTCTCACCAGGCCTGCCCGTCCTCCCAAGCCCAAATCTGTCTCCAATGGCCTCAAAAGACGTCCGGGTCGCCCCCCTAAAATCCAATCCCAACCAACTGTCATCCCTTTCGCTTCTGTTCCCTTTCCTTCTCATCCTCAAGAGGACCCCACTCTTGGATCTCCCAGGCCCAGAGGCCGCCCCAAGAGATATGCAGATGAGGTCGTGCCAAGTACCGGAGCACCTTCCGCATTATCTGTGGTCAATGCTCCGCCGATGAGGCGGGGCCGTCCTCCGAAGCTTGCTGTTGTTAGTAAGCCCAAGAATTCCACCGGAAGGCCCGTTGGCCGCCCAAAGGGAGCCAAAGCTGCAAAAAAGTTTGCTGATGAAGATTTAAGAAGGAAATTTGAATACTTTGTAAGTTGA 948 0.5179 MDSTSFHPPPPPPTTTVPFTLEPAADYNNHHHAATTHPPYAEMIYKAIEALKEKDGSSKRAIGKYIEQVYSEVLPPQHNTMLTQHLNHLKSAGLLIMFKKSYKLPSSLPPPPTIPRSHLPFTPITQRGRGRPPKPKPHPIPPSLNDPAPDFDKLGPPKIDVGSTFTVKRGRGRPPGTTRSRSLTRPARPPKPKSVSNGLKRRPGRPPKIQSQPTVIPFASVPFPSHPQEDPTLGSPRPRGRPKRYADEVVPSTGAPSALSVVNAPPMRRGRPPKLAVVSKPKNSTGRPVGRPKGAKAAKKFADEDLRRKFEYFVS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00171 315 Pfam linker histone H1 and H5 family 37 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car06g00171 315 SMART AT_hook_2 286 298 IPR017956 GO:0003677
Car06g00171 315 SMART AT_hook_2 168 180 IPR017956 GO:0003677
Car06g00171 315 SMART AT_hook_2 200 212 IPR017956 GO:0003677
Car06g00171 315 SMART AT_hook_2 236 248 IPR017956 GO:0003677
Car06g00171 315 SMART AT_hook_2 266 278 IPR017956 GO:0003677
Car06g00171 315 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Car06g00171 315 PANTHER HISTONE H1-LIKE 9 297 - -
Car06g00171 315 PANTHER HISTONE H1 9 297 - -
Car06g00171 315 Gene3D - 32 112 IPR036388 -
Car06g00171 315 PRINTS Histone H5 signature 23 44 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car06g00171 315 PRINTS Histone H5 signature 182 201 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car06g00171 315 PRINTS Histone H5 signature 50 67 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car06g00171 315 MobiDBLite consensus disorder prediction 106 298 - -
Car06g00171 315 PRINTS AT-hook-like domain signature 126 136 IPR017956 GO:0003677
Car06g00171 315 PRINTS AT-hook-like domain signature 234 244 IPR017956 GO:0003677
Car06g00171 315 PRINTS AT-hook-like domain signature 166 177 IPR017956 GO:0003677
Car06g00171 315 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 36 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car06g00171 315 CDD H15 34 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car06g00171 315 SUPERFAMILY "Winged helix" DNA-binding domain 34 111 IPR036390 -
Car06g00171 315 SMART h15plus2 34 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00171 Car-Chr6 1950970 1953745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00171 43 109 Single Myb Histone (SMH) Gene Family AT1G49950 40.299 1.73e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00171 - - mtr:MTR_8g106980 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00171 06 1950970 1953745 Car06g00171 06 1950970 1953745 ECH