Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00157 ATGGTGGTTCAGGTCGAACCTGCTAAGCTAAGGTGGGGAGAATTGGAGGAAGACGATGGTGAGGATCTTGATTTTCTGTTACCTCCAATTCAGGTGATAGGCCCTGACCATAATGGAATCAAGAGCGTCATTCAATACAAATTCGATGATGATGGTAACAAAGTTAAGATCACAACTATCACTCGCACTCGCAAACTCGCCCACGCGCGTCTCACCAAACGCGCCGTTGACCGTCGTTCGTGGCCTAAATTCGGCGATGCCGTCCAGGAAGATGTTGGTAGCCGCCTCACTATGGTCTCCACTGAAGAGATCCTTCTCGAACGCCCTAAACCTCTTGGTTCCAAAAATGAAGATCCAAAAACTGTTAACCCATTGTCACAATTCCAAAAAGGTGCTGTTCTTATGGTATGCAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCATATAAGGATCTCACACAGCCATCTGAGGAGTTTGTTGATAAACCTGCTGCAACGGATGCAGCTGCGGCTCCAGCCGGTTCGACTAAGGGTGTATATGTACCTCCCGGCCAGAGAGCTGGTGCAGAGAGGACTTCTGGGTCAGACATGAGGCGGAGAAATGATGAGAATTCTGTTCGGGTAACCAACCTCTCGGAGGACACAAGGGAGCCTGATTTACTTGAGCTGTTCCGACCTTTTGGTGCTGTGAGCAGGGTTTATGTTGCTATTGATCAAAAGACTGGCATGAGTAGGGGCTTTGGCTTCGTCAACTTTGTCGGCAAGGAAGATGCTCAGAGGGCTATTAACAAACTCAATGGATATGGCTACGATAATCTCATCCTGAGAGTCGAATGGGCCACCCCAAGAACAGCCTCCTAA 873 0.4891 MVVQVEPAKLRWGELEEDDGEDLDFLLPPIQVIGPDHNGIKSVIQYKFDDDGNKVKITTITRTRKLAHARLTKRAVDRRSWPKFGDAVQEDVGSRLTMVSTEEILLERPKPLGSKNEDPKTVNPLSQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLTQPSEEFVDKPAATDAAAAPAGSTKGVYVPPGQRAGAERTSGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVGKEDAQRAINKLNGYGYDNLILRVEWATPRTAS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00157 290 Gene3D - 162 290 IPR012677 -
Car06g00157 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Car06g00157 290 SUPERFAMILY RNA-binding domain, RBD 194 288 IPR035979 GO:0003676
Car06g00157 290 CDD RRM_eIF3G_like 209 284 IPR034240 -
Car06g00157 290 PIRSF Transl_init_eIF-3_RNA-bind 1 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Car06g00157 290 MobiDBLite consensus disorder prediction 168 207 - -
Car06g00157 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Car06g00157 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Car06g00157 290 SMART rrm1_1 209 282 IPR000504 GO:0003723
Car06g00157 290 CDD eIF3G 38 155 IPR024675 -
Car06g00157 290 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Car06g00157 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Car06g00157 290 Pfam Eukaryotic translation initiation factor 3 subunit G 32 156 IPR024675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00157 Car-Chr6 1842169 1843787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00157 4 287 Eukaryotic Initiation Factors Gene Family AT3G11400 65.506 6.86e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00157 K03248 - gmx:100818725 493.426