Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00142 ATGTCATTGAGGCGCGAAAATTCTAAAAATAGATTTTATGTGTATGGTCTTTTTAAGATAAGGGGACAAAAAAGAATTCCAGTCAACTGCTGCGACTGCGTATACAATGCATCCCACAAACGTATCGTATATATACATACAACCTTTTATATTCATATTCATTCAATCTTCTTTTCACCCCATTTTTCGTTCTTTCTTGATAATCTAAAACAACTCAACAACACCAATATAAGCTCCTCTAAATCCCATTCCCAATCAGTTATGAGCTTACAACGGAGGGATAGGGTTTGTCGTCAGGAATGGGTTCGTAGACCAtcctcctcctcctcctcctcctcAACCATAAACGAGAATCAGAATGGTGGCTCCAATCGAATAAGGAATGTCCGTCAAGATCAAGAGGAGAAAGGATTATTGAATTTACATTTACCTCAACTGCTGCAAGAGATTCAAGACAAGCTCAACAAAGGCACAGTCGAGTGCATGATTTGCTATGAAACTGTTGGAAGGTCTGCACCTATCTGGTCATGCTCCAGTTGCTACTCAATCTTTCACCTCAATTGTACAAACAACTGGGCTCGTGCACCCACTTCATCTGCATCTCCCCACAACAACCACTGGCGCTGTCCTGGTTGTCAATCTCTTCAGCTCAATTCCAACAACCACATCATCATTAGCTACTTTTGCTTCTGCAGGAAGAGGCTTGACCCTCCATCCGATTTCTACCTAACGCCTCATTCCTGTGGAGAACCGTGTGGGAAGCCTCTTCAGAATGGGAACAGCAAGTCTGGGGATCTTTGCCCTCATGTTTGTGTTTTGCAATGCCATCCCGGTCCATGTCCTCCTTGCAAAGCATTTGCTCCGCCCCGTTTGTGCCCTTGTGGGAAGAAAAATATTACCACTCGCTGTTCGGACGGCGAATCTCTTACTTGTGGCCAACAATGTCAAAAGCTTCTTCAATGTGGGCGCCATCGGTGTGACCAATTTTGTCATCTTGGTCCTTGTGATCCTTGTCATCTTCCAACCGATGCTTCTTGCTTCTGTAGTAAAAAGTCTGAAGCTATTCTTTGTGGGGACATAGCCTTGAAGGGTGAAATCAAAGTAGAAGGTGGAGTTTTTTCTTGTGGTTCCACTTGTGGAAATAAACTTGGTTGTGGAAATCATATTTGTACTGAGACCTGTCATCTAGGCAGCTGTGCCGAGTGTGACTTGTTGCCAACTCGTGTTAAGACATGTTGTTGCGGGAAAGTTAGCTTAGAGGGAGAACGACACAGTTGTTTAGACCCAATACCTACCTGTTCACAAGTATGTGGCAAGTCCCTTCCTTGTGGTATGCATCGTTGTAAACAGAAATGCCATGTTGGGGATTGTTCTCCTTGTTTGGTTTTAGTCCCTCAGAAGTGTCTGTGTGGCTCAACTTCCAGAACTGTGGAGTGCTGTAAGACAACAACGGAAAATGAGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATCGTTGTAGTGAACGGTGTTGTCCACTCTCTAATTCAAAAAATATTCTAAATGCAGATTGGGATCCACACCTCTGTTCCATTTCATGTGGAAAGAAGTTACGCTGTGGGCAACATGCGTGTGATTCCCTATGTCACAGTGGTCATTGTCCACCTTGTCTTCAAACTATATTCACGGATTTGACATGTGCTTGTGGCAGGACTTCAATCCCTCCTCCATTGCCCTGTGGTACACCGATGCCGTCATGTCAGCTTCCATGTTCAGTTCCTCAGTCATGTAGCCATCCAGCTTCCCACAGCTGTCATTATGGAGATTGCCCTCCTTGTTCTGCACCTGTAGCAAAAGAATGTATTGGCGGACATGTAGTTCTTAGGAACATATGTGGCTCAAAGGATATTAGATGTGATAACCTTTGTGGGAAGACTAGACATTGTGGTTTACATGCCTGTGGCAGAACATGTCACTCCCCACCTTGTGATAATCACACTGTTGTGCAAGGCATTCGAACTTCATGCAGGCAAACATGTGGCGCTCCAAGGAGAGATTGCCGCCATACATGTACAGCTCCTTGTCACCCTTCATCTCCATGTCCAGATAGAAGATGTGAGTTCCCTGTCACAATCACTTGTACTTGTGGCCGAATAACAACAAATGTCCCTTGCGATGCTGGTGGTGGTAGTGCTAATTATAATGTTGATGATATACTTGAGGCTTCCATTATTCAAAAGCTTCAACCATTGGATGCTAACGGCAAAGAAGTTTCCCTCGGACAACGGAAACTAATGTGTAATGATGAGTGTGCTAAGTTGGAGCGTAAAAGGGTTCTCACTAATGCTTTTGAGATTACAACTCCAAATCTAGATTCTTTTAATCTAGGTGAGAATTCTGTTGCTTCTTCTGCATTACTTGGTGATATATTGAGGCGTGATAGTAAGTGGGTTTTGTCTGTTGAGGAGAGATGTAAGTGTTTAGTACTTGGCAAGAGCAAAGGAACCACACATGGTCTAAAAGCCCATGTTTTTTGTCCCATGCTAAAGGATAAAAGAGATGCGGTGAGGATGATTGCTGAGAGATGGAAGCTTGCAATAAATACAGCGGGCCGGGAGCCAAAGCAATTTATAGTTGTTCATGTTTCCCGAAAATCAAGAGCTCCATCACGCGTGCTAGGGATTAAGGGTACTACAACTGTACATGTGCCCCTTCCTCCTGCATTTGATCATTTAATAGACATGGACCCTCGATTTGTTGTCTCTTTCCCCGACTTACCAAGGGTTGCAGATATCAGTGCGTTGGTGTTAAGATTTGGAGGTGAGTGCGAACTTGTTTGGTTAGATGACAAAAATGCATTAGCTGTTTTTAACGATCCTGCCCGAGCTGCAACTGCAATGAGAAGGTTGGATCATGGAAGTGTTTATCAGGGAGCTATTAAGGTTGTTCAGAATGTAGGGGCATCTGTAGCATCTTCAGTTACAAATGCTTGGGGAGGAGCTAGAACAACGAAAGGAGGGGCACTGGTAGCATTGAAGGGTCATGTGTGGAAAAAGGCTGTTGTTGTAGAATCAGGATGGAGAGAAGATTCTTGGGGCGATGAGGAGTGGGCTACTGGTTCTGCTAATATTATCCAGTCATCTATTTGGAAGAAAGAAGCACCAATATCTGCTTCATCAAATCCTTGGAGTGTCTTAGATCAAGAATGGCCTTCAAGTTCATCTGCTGCTGCTGTTAAAGACGATACTTCAAGAAAACAAACTGAAAGTAATGTTGTGACAAAGTTGGATCCTCGGGATGGTGGTTCAAATCTAGAACACCAGCATGGAAGAGACTTTGACACTTCAAAAGTTTTTGATGTAGTAGATGATTGGGAGAAGGCTTGTGAATGA 3390 0.4327 MSLRRENSKNRFYVYGLFKIRGQKRIPVNCCDCVYNASHKRIVYIHTTFYIHIHSIFFSPHFSFFLDNLKQLNNTNISSSKSHSQSVMSLQRRDRVCRQEWVRRPSSSSSSSSTINENQNGGSNRIRNVRQDQEEKGLLNLHLPQLLQEIQDKLNKGTVECMICYETVGRSAPIWSCSSCYSIFHLNCTNNWARAPTSSASPHNNHWRCPGCQSLQLNSNNHIIISYFCFCRKRLDPPSDFYLTPHSCGEPCGKPLQNGNSKSGDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDGESLTCGQQCQKLLQCGRHRCDQFCHLGPCDPCHLPTDASCFCSKKSEAILCGDIALKGEIKVEGGVFSCGSTCGNKLGCGNHICTETCHLGSCAECDLLPTRVKTCCCGKVSLEGERHSCLDPIPTCSQVCGKSLPCGMHRCKQKCHVGDCSPCLVLVPQKCLCGSTSRTVECCKTTTENEKFTCEKPCGQKKNCGRHRCSERCCPLSNSKNILNADWDPHLCSISCGKKLRCGQHACDSLCHSGHCPPCLQTIFTDLTCACGRTSIPPPLPCGTPMPSCQLPCSVPQSCSHPASHSCHYGDCPPCSAPVAKECIGGHVVLRNICGSKDIRCDNLCGKTRHCGLHACGRTCHSPPCDNHTVVQGIRTSCRQTCGAPRRDCRHTCTAPCHPSSPCPDRRCEFPVTITCTCGRITTNVPCDAGGGSANYNVDDILEASIIQKLQPLDANGKEVSLGQRKLMCNDECAKLERKRVLTNAFEITTPNLDSFNLGENSVASSALLGDILRRDSKWVLSVEERCKCLVLGKSKGTTHGLKAHVFCPMLKDKRDAVRMIAERWKLAINTAGREPKQFIVVHVSRKSRAPSRVLGIKGTTTVHVPLPPAFDHLIDMDPRFVVSFPDLPRVADISALVLRFGGECELVWLDDKNALAVFNDPARAATAMRRLDHGSVYQGAIKVVQNVGASVASSVTNAWGGARTTKGGALVALKGHVWKKAVVVESGWREDSWGDEEWATGSANIIQSSIWKKEAPISASSNPWSVLDQEWPSSSSAAAVKDDTSRKQTESNVVTKLDPRDGGSNLEHQHGRDFDTSKVFDVVDDWEKACE 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00142 1129 CDD NF-X1-zinc-finger 311 359 - -
Car06g00142 1129 ProSitePatterns Zinc finger PHD-type signature. 161 212 IPR019786 -
Car06g00142 1129 CDD NF-X1-zinc-finger 375 420 - -
Car06g00142 1129 ProSiteProfiles Zinc finger RING-type profile. 161 213 IPR001841 -
Car06g00142 1129 CDD NF-X1-zinc-finger 675 724 - -
Car06g00142 1129 CDD NF-X1-zinc-finger 529 581 - -
Car06g00142 1129 Pfam NF-X1 type zinc finger 269 284 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 Pfam NF-X1 type zinc finger 603 613 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 Pfam NF-X1 type zinc finger 443 460 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 Pfam NF-X1 type zinc finger 501 512 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 Pfam NF-X1 type zinc finger 385 402 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 Pfam NF-X1 type zinc finger 321 338 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 Pfam NF-X1 type zinc finger 539 556 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 Pfam NF-X1 type zinc finger 679 704 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 Pfam NF-X1 type zinc finger 648 663 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 MobiDBLite consensus disorder prediction 101 126 - -
Car06g00142 1129 ProSiteProfiles Zinc finger PHD-type profile. 158 215 IPR019787 -
Car06g00142 1129 SUPERFAMILY RING/U-box 160 216 - -
Car06g00142 1129 MobiDBLite consensus disorder prediction 1073 1110 - -
Car06g00142 1129 SMART znfxneu3 501 531 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 SMART znfxneu3 596 614 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 SMART znfxneu3 321 340 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 SMART znfxneu3 385 404 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 SMART znfxneu3 686 707 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 SMART znfxneu3 648 677 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 SMART znfxneu3 443 462 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 SMART znfxneu3 539 558 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 SMART znfxneu3 267 285 IPR000967 GO:0005634|GO:0008270
Car06g00142 1129 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 92 1126 - -
Car06g00142 1129 CDD NF-X1-zinc-finger 433 481 - -
Car06g00142 1129 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 92 1126 IPR034078 GO:0003700
Car06g00142 1129 CDD RING-CH-C4HC3_NFX1 160 213 - -
Car06g00142 1129 CDD NF-X1-zinc-finger 248 305 - -
Car06g00142 1129 MobiDBLite consensus disorder prediction 102 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00142 Car-Chr6 1741176 1747340 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Car06g00142 zf-NF-X1 31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00142 K12236 - gmx:106799700 1674.45