Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00127 ATGGCAGCAACCAATCGCACAGTGTTACAGTTttcttcatcttcttcctcttctCAGAGCTTATCCGCGAAGGTTCACCCACTCGTTATCTTCAACATTTGCGATTGCTACGTTCGACGCTCTGATCAAGCTGAGCGTGTCATCGGAACTCTTCTCGGATCCGTTCTTCCCAATGGAACCGTCGATATCCGTAATTCCTATGCCGTCCCTCACAACGAGTCCGTCGATCAGGTTGCTTTGGACATAGAGTACCACCATAATATGTTACTGTCCCACCAAAAAGTGAATCAAAAGGAAGTCATTGTTGGATGGTATTCAACTGGACTTGGAGTAACTGGTGGTAGTGCATTGATCCATGAATTTTATTCTCGAGAAGTACCCAATCCCATACATTTGACTGTTGATACAGGATTCACAAATGGAGGGGGTACCATTAAAGCATATGTGTCAAACAATTTATCTCTTGGAGACAGGCAAATCGCGGCACAGTTTCAAGAAATTCCATTGGACCTTCGAATGGTTGAAGCCGAGCGAGTTGGATTTGATACCCTAAAGGCAACCGCCGTTGATAAAATTCCCTCTGACTTAGAAGGCATGGAAGCAACAATGGAACATCTGCTAGCTTTGATTGATGACATCTACAAATATGTTGATGATGTTGTGGAAGGGCGTGTTGCACCCGACAACAAAATTGGGAAATTTATATCAGATGCAGTAGGTTCCCTTCCCAAATTGCCCCCATCAGATTTTGATAAGCTTGTGAATGACAGCTTGCAGGATCACTTGCTCATGCTATATTTATCTAGCATCACAAGAACTCAGCTTAGCTTGGCTGAAAAATTGAACACGGCTGCTCAGATTTTGTAA 867 0.4256 MAATNRTVLQFSSSSSSSQSLSAKVHPLVIFNICDCYVRRSDQAERVIGTLLGSVLPNGTVDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNQKEVIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTNGGGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERVGFDTLKATAVDKIPSDLEGMEATMEHLLALIDDIYKYVDDVVEGRVAPDNKIGKFISDAVGSLPKLPPSDFDKLVNDSLQDHLLMLYLSSITRTQLSLAEKLNTAAQIL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00127 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 12 287 - -
Car06g00127 288 SMART pad1_6 22 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Car06g00127 288 ProSiteProfiles MPN domain profile. 23 154 IPR037518 -
Car06g00127 288 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 21 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car06g00127 288 Pfam Maintenance of mitochondrial structure and function 175 281 IPR024969 -
Car06g00127 288 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 21 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Car06g00127 288 CDD MPN_eIF3f 24 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car06g00127 288 Gene3D Cytidine Deaminase, domain 2 10 189 - -
Car06g00127 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 12 287 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00127 Car-Chr6 1557589 1561815 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00127 1 288 Eukaryotic Initiation Factors Gene Family AT2G39990 77.474 3.18e-161 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00127 K03249 - gmx:100790913 515.383