Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00116 ATGGAGCAACAGTACTCTGCAGTTAGTCTTTCAGATGATTCTGATACATCAAGCCATTATAGGCCAGAATCAGCATTCTACATGACATCTTTTACAGCAACAATCTTTCTTGCTTCACTTGTGACTCTTGGAGTTTTATTAATTACTTTGCTGGTTTCCTTGGCGATTATGCTGCAATCATGTCAAAGTGAAAATCCCGGAGCTACTGAACTTGCGAATTTAAATGATTACTACAGTCATTGCAGGGTGCATTCTCTGCATGCTCAGCTCAATAGCTTAGAAGAATATGATCTTCCAAACATATGTAGAGATTTGACTATACATTATATCAAAGGAGGTCAATATGCTATAGACTTGAATTTAACTGTGTCTATGATTGATGATTACTTCAAGAGTCTGAGACCTTCAGATAATGGTTTGGATGTGGTGTTGATTGACATAGATGACATTGTTCCTCCAAATCCTTATTCTTTTTACTTGTATCACAGGTCTCATAATGACAGCATTAGTAACTGTATGAAAGAAGCAAAAGATGTAAAGCTCATGTTTGTTTTAAGATTATACATGAAGCTTCAAACTGATGGATGGTCTATAATTTTGTTATCAAGAGAATCTCAAATATACCAAAATGTCACCATTAACCATCTTGTTTCTGCAGGATTTAGTGATTGGTCTTCCTTGATGATGAGAGCAGAAGATTCAGATTCTACCAAATGGAATGAGTATTTTTCTAGGCAAAGAAGTGTGATGCAGAAAAATGGCTTCAACATAAGAGGCATTATAAGCAGCCATTTCGATGCGTTGACCGGTCCAGATACTGGAACACGAAATTTTCTGCTTCCAGACCTTTTATGTGGAGGTACTAAGTTCGAGAGTGGGGCGCGGCGAGATTCTCTCAACCGAAGAAGACTTCAATTTTGTGTGAAGTTGCTTCATTTTCCCCTTTATCTTCACCGATCCACCATTTCTCACTTTCTATTCACAAGATCTAAAAAGATAGAGCGATGTCTTTCATTGCTTTCTGCTGATGGCACTTCTTACCATAAAGCTTGTTTCAGATGCTCTCACTGCAAAGGAACTTTAAAGCTGAGCAGCTATTCCTCAATGGAAGGTGTTCTTTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAGACTGGCACCTTCAAGAAGAACTTCACGTCACCTGCAAAGTTAGCTGACAAGACAACTCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCAAGCATGTTTTCTGGGACACAAGACAAGTGTGCCACATGTGGCAAAACTGCTTATCCGTTGGAGAAGGTAACGGTGGAAAGCCAGGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGTTGTCCTATAACTCCATCAAATTATGCAGCCCTTGAGGGAATTTTGTATTGCAAGCACCATTTCTCTCAGCTTTTTAAGGAGAAAGGAAGCAATGTATTCTTGAGAGACTTGAGGGTTTCAAATAATGAGCTCTTGAGAAAGTATCATGTTGGAAGTGTTAAAGGTGCAGCTTTGGAAGTGCTCTGCTATTGTGCAAGAGGCTTATTGGTTTCATTAAGATCTATACTTCTCTGGGAGCACATCAAGTTATCAACTATGTTGAGACATTTGGAAAGTGTGCGTGTGGGTGACAAATGCAGCTTAAGTGAACTGAGCCCTAATGAGCAGCCAATGTCGGAATCATCATCTTCCACTCTCCGAGATACTCTCCTTCGGTTATCAAATTCAATCACTGACTTTCTAGCAACAACTCCTTACAAAAGCTCCAACATCTCCGTCAAAGCATTTCTTGAACCACTTCTGACATGCACAAATTCCACCATCCACACTTCTATCAAAGACTTCGCTCTAGCATGTGCTCTTCTATCTTCTTCCACTGACACCAATTCAGAGCTTCTTTCATGGATCCCTAATCACCTTTCCTCCCTTGCAACCACTTCCTTTTATCAACTCTCCGAAGCGTACCTCACTGTCTTCAACGATAGGAACTCCCAGAAGGTTGCTGAATTAGGTTTGAATTGTGACCTTGTTCCTCCACAGAAGAGGTTGCTTCTCGAATTGGTTCCTGATGTACTTCCTTTTCTGAAAGAGAGAATTAAGGAGAGTTCTATTGATAAGTCTGATGAGTATGACGAGTTTTCCGCTGCATCTGCTAGAGTTCCAGTTGGGTTTGCGATTCTTGCTTCTTTTCAGTTTAGATGGTTTGTTACTCAGGTTGATTATCCTCATTTGGGAAAGTTGTGTGGATGGGTGATTCCTTGTGCATTGACTGCTGTTGATCATTGGTCGCCAGCCGTGAAGGGACAAGGCATGGTTAGCTTTATACATCTTGGGAAAAATGTGGATGCTGCTGAACTCGGTGGGTATGAGGATGTGATACTTGATGCCTGCTGCCAGAATATTGCTTCTGATGATGAAATATGGCACTATGTGATTGAAGCATCAGTAATTTTCATGTCTCTTACTCAGAAAAGTAATCCACGCGGTCTGTGGTTTGAAAGGATGTTGAACGAGATGTTAAGTCACTTGGAGCGTCAACCAAGAAACAAAGAGCGCCGCATTGCATGGCTTAAATCTGTTGAATCACTATTTAATGGAGTTGGTCTTGTGCTTTTAGCTCACTTCAGGCGCATTTTCCCATTATTTTTTCAGTGGATGCATGCCGATGATGATGATACTGTTATTTTGGTTCTGAAGTGTACTTACACAGTTTTGAGATTAACGTGGATTAGGAATTCACCATATGTTGCAAGATTGGTAGATGAATTGGCTCTTGTGTATAAGGAGGCAGCACTGGCAACAGCCAAGGAAGATATTAGAGCAAATATATCTCAGATACTGGTCCTACTTCAAGAAATCAGAGGCCAACGTTTTAATATAGCTTGGGACAAGCATCAATCCGATCCAGATTTGACCACTCTTAATCTGTCATTAAGTGGAAGAAACCATTCTAACCTTGATAACCTAACCCTACCTTTAGAGATCATTCAGAAGGGTTCTGCAAGTGTTCAAACATGA 3045 0.4059 MEQQYSAVSLSDDSDTSSHYRPESAFYMTSFTATIFLASLVTLGVLLITLLVSLAIMLQSCQSENPGATELANLNDYYSHCRVHSLHAQLNSLEEYDLPNICRDLTIHYIKGGQYAIDLNLTVSMIDDYFKSLRPSDNGLDVVLIDIDDIVPPNPYSFYLYHRSHNDSISNCMKEAKDVKLMFVLRLYMKLQTDGWSIILLSRESQIYQNVTINHLVSAGFSDWSSLMMRAEDSDSTKWNEYFSRQRSVMQKNGFNIRGIISSHFDALTGPDTGTRNFLLPDLLCGGTKFESGARRDSLNRRRLQFCVKLLHFPLYLHRSTISHFLFTRSKKIERCLSLLSADGTSYHKACFRCSHCKGTLKLSSYSSMEGVLYCKPHYEQLFKETGTFKKNFTSPAKLADKTTPELTRSPSKAASMFSGTQDKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSNVFLRDLRVSNNELLRKYHVGSVKGAALEVLCYCARGLLVSLRSILLWEHIKLSTMLRHLESVRVGDKCSLSELSPNEQPMSESSSSTLRDTLLRLSNSITDFLATTPYKSSNISVKAFLEPLLTCTNSTIHTSIKDFALACALLSSSTDTNSELLSWIPNHLSSLATTSFYQLSEAYLTVFNDRNSQKVAELGLNCDLVPPQKRLLLELVPDVLPFLKERIKESSIDKSDEYDEFSAASARVPVGFAILASFQFRWFVTQVDYPHLGKLCGWVIPCALTAVDHWSPAVKGQGMVSFIHLGKNVDAAELGGYEDVILDACCQNIASDDEIWHYVIEASVIFMSLTQKSNPRGLWFERMLNEMLSHLERQPRNKERRIAWLKSVESLFNGVGLVLLAHFRRIFPLFFQWMHADDDDTVILVLKCTYTVLRLTWIRNSPYVARLVDELALVYKEAALATAKEDIRANISQILVLLQEIRGQRFNIAWDKHQSDPDLTTLNLSLSGRNHSNLDNLTLPLEIIQKGSASVQT 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00116 1014 ProSiteProfiles LIM domain profile. 302 385 IPR001781 -
Car06g00116 1014 CDD LIM2_SF3 425 485 - -
Car06g00116 1014 PANTHER ACID PHOSPHATASE-LIKE PROTEIN 11 287 - -
Car06g00116 1014 PANTHER ACID PHOSPHATASE-LIKE PROTEIN 11 287 - -
Car06g00116 1014 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 417 450 - -
Car06g00116 1014 Gene3D - 76 286 IPR023214 -
Car06g00116 1014 SMART lim_4 424 476 IPR001781 -
Car06g00116 1014 SMART lim_4 330 378 IPR001781 -
Car06g00116 1014 Gene3D Cysteine Rich Protein 330 389 - -
Car06g00116 1014 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 353 393 - -
Car06g00116 1014 SUPERFAMILY ARM repeat 567 956 IPR016024 -
Car06g00116 1014 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 451 486 - -
Car06g00116 1014 Pfam LIM domain 425 480 IPR001781 -
Car06g00116 1014 Pfam LIM domain 333 382 IPR001781 -
Car06g00116 1014 Pfam HAD superfamily, subfamily IIIB (Acid phosphatase) 76 282 IPR005519 -
Car06g00116 1014 Gene3D Cysteine Rich Protein 419 488 - -
Car06g00116 1014 ProSiteProfiles LIM domain profile. 423 483 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00116 Car-Chr6 1445385 1461306 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Car06g00116 Acid_phosphat_B 3.6e-18 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00116 K23115 - gmx:100814295 625.55