Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00112 ATGGAGCAACAACAAAACCTAACAGACGAAAACTTCCCACTCTTCAAACCATCCTGCAAACCCTCCATAAACCCTTCACCCCTCACTTCCAATGCCACAGAACGTAACTCCCATCCCCAAATCCCTCAAAACGCAGTCGTTTCCAATGAAAACCCTAACTCTACCGCCGAAAACACCAATGACACCTCCGCCGCCACGTTTTCCGATCTTGGACTATCAGAATGGGTTGTCAAGACGTGCAAGGAGCTCGGCATGAAGAAGCCACGGCGCGTGCAACAGCACTGTATCCCAAAGGTTCTAGAAGGCCGCCACGTGATCGGTATCGACGAGACTGGAAGCGGTAAAACGGCGGCGTTTGCGCTTCCTATTCTTCAGCGTCTCGCTGAGCATCCGTTCGGTGTGTTCGCTCTCGTGGTGACGCCCACGCGCGAGCTTGCGTTTCAGCTGGCTGAGCAGTTCCGCGCCCTTGGATCCTCGCTCCGCCTCCGCATTGCGGTTATTGTTGGAGGTATGGATATGCTTAAACAGACTCAAGAGTTGGTCGCCAGACCTCACCTTGTTATCGCTACTCCCGGGAGGATTAAGGTCTTGCTTAAAGATAGTCCTGAAATTCCTCCTGTTTTTGCTAGGACTAAGTATCTTGTCTTGGATGAAGCGGATCGAGTCCTGGATGTTGGTTTTCAGGAGGAGTTGAAATTTATCTTTCAGTGCTTACCTGAAAACCGGCAAAACTTGTTCTTTTCTGCAACCACGACGAGTAATCTTCAAAAGTTGTGTGACCGTTACCAAGATAAGCTGTATGCCTTTGAGGCTTATGAAGGGTTTAAGACAGTTGAAAAGCTTACACAACAAGGTGTAATAATTCCTAAAAAGGTGAAGGATGTATATTTGATGTATGTGTTGTCTAAAATGGAAGAAAATAGCATTCGGTCTGCTATTGTCTTTGTCTCCACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCGCTATATTCATTCAGGTCACAGGCTCAGAGGCTTGAAGCACTTCAGGAATTTAAATCAGGAAAGGTTTCAATATTACTAGCAACTGATGTTGCCGGTCGCGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATACATCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGAGGACAAGCTTTGAGCCTCATCACCCAGAATGATGTTGCTCTCATTCATGAAATAGAGGCCCTTATTGCAAGGCAACTTGAAATAATTGTATACAATGAAAAAGAGGTGCTATCTTTGATGAAAAAGGTTTTCAGTGCTAAGAATGTTGCAGAAATGAAGATGATGGATGATGGCTTTGaagagaaagcaaaagagcggaaaaaacagaaactgaaaatgctagaagagaaaggattattaaaggatagaagtaaaaagagaaaaagaaaTAAAGAATTTGCCAAGAAAGGTAAAAAGCAGGGAAAAAAGGAGGTGGAGGCATTAGGAGATGTAGCATCACTAAAGAGAAGGAGTAAGACTAAGAAGAGCGAATAA 1593 0.425 MEQQQNLTDENFPLFKPSCKPSINPSPLTSNATERNSHPQIPQNAVVSNENPNSTAENTNDTSAATFSDLGLSEWVVKTCKELGMKKPRRVQQHCIPKVLEGRHVIGIDETGSGKTAAFALPILQRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSLRLRIAVIVGGMDMLKQTQELVARPHLVIATPGRIKVLLKDSPEIPPVFARTKYLVLDEADRVLDVGFQEELKFIFQCLPENRQNLFFSATTTSNLQKLCDRYQDKLYAFEAYEGFKTVEKLTQQGVIIPKKVKDVYLMYVLSKMEENSIRSAIVFVSTCRDCHRLSLMLEVLDQEAAALYSFRSQAQRLEALQEFKSGKVSILLATDVAGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGQALSLITQNDVALIHEIEALIARQLEIIVYNEKEVLSLMKKVFSAKNVAEMKMMDDGFEEKAKERKKQKLKMLEEKGLLKDRSKKRKRNKEFAKKGKKQGKKEVEALGDVASLKRRSKTKKSE 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00112 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 422 IPR027417 -
Car06g00112 530 Gene3D - 276 524 IPR027417 -
Car06g00112 530 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 443 IPR001650 -
Car06g00112 530 SMART helicmild6 323 404 IPR001650 -
Car06g00112 530 Gene3D - 30 268 IPR027417 -
Car06g00112 530 PANTHER RNA HELICASE 63 497 - -
Car06g00112 530 CDD DEADc_DDX49 67 270 - -
Car06g00112 530 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 215 223 IPR000629 -
Car06g00112 530 SMART ultradead3 84 284 IPR014001 -
Car06g00112 530 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 65 93 IPR014014 GO:0003724
Car06g00112 530 CDD SF2_C_DEAD 281 413 - -
Car06g00112 530 MobiDBLite consensus disorder prediction 1 63 - -
Car06g00112 530 Pfam DEAD/DEAH box helicase 90 258 IPR011545 GO:0003676|GO:0005524
Car06g00112 530 Pfam Helicase conserved C-terminal domain 297 404 IPR001650 -
Car06g00112 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 269 IPR014001 -
Car06g00112 530 MobiDBLite consensus disorder prediction 478 530 - -
Car06g00112 530 MobiDBLite consensus disorder prediction 503 524 - -
Car06g00112 530 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 63 497 - -
Car06g00112 530 MobiDBLite consensus disorder prediction 22 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00112 Car-Chr6 1401236 1406219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00112 58 445 Eukaryotic Initiation Factors Gene Family AT3G13920 32.474 9.52e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00112 K14778 - gmx:100804060 723.391