Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00101 ATGGCTCCTCCTTCAGATATCAATGATCTTTCTCACCCTTGCATATACGGGGAGTTTTCATCTTCATACTCAGAAAGGAAGTCTGGTTTTATGAAATGGTTTGGTAAGGTTTTCAAAATTGGATCTAATAGAGGAAAAGGTGGTGGTCATCATTTGCAGCAACCTGTGGAGGAAAACATGGCTTGGAGAGCTCCACCTAGATCCTTGGATAACCGTGCTAGATCTAAGAAGGAGGAAGAGGATTTGAATGCAAAGAGACCATCAGGATATAGATGGCCGACAGGAACTGATGATGATTATACAAAGGCACTTCAGGATCGCATGCATTCATCTCTACATCCTCCATATGCCCCTTTACCTTTTTATCCCCGGGGATACAGTATGCCATCACATATCCGGATATGTGGAGGGTGCAGCCAAGAGATATTCTACGGAAATTGTTTGGGAGTCGAACATAGTTACTTTCATCCGGACTGCTTTCGGTGTCACTCTTGTCATCACCCTATTACTGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTATTGTTTTAAAGAATTGTCTCATCCTAAATGTGAAGTTTGCCATCATTATATACCGATAAATGCTTCTGGTTTGATCGAGTATAGGTGTCATCCCTTTTGGAACCAAAAGTATTGTCCTTCTCATGAATATGATAATACAGCTCGCTGTTGTAGTTGTGAAAGATTAGAGTCTCGCGGTGAAAGATACTTTAGATTGGAAGATGGACGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAACAGATACTGGTGAATGCCAACCTCTTTATCATGCTATTAGAGACTATTATGAAGGAATGAATATGAGAATCGATCAACAAATCCCCATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAGAAGAATGGTTTCCATCACCTGCCAGAAACAAGAGGCTTGTGCCTTTCAGAAGAGCAGACTGTCACCAGTGTCCATAGATGGTCAAGAATTGGAGGCCATCGATTAATGGGTATGCGAACTCAACCTCAAAAGCTGATTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCATGGTTGGTTACGCCTTAAAGGTTACCGCAACCTTGATCCTGCAGTAGAGGAAGGTATTTGTCAGCTTCTTTCTTACTTGTGGCTTGATGCAGAAGTGATGTCAGGGTCTAGAACCATGCCATCAACATCATCAGCTTCTTCTTCTTCCTCTTACTCATCGAAGAAAGGTGTGAAATCCAAAGTTGAGAATAAATTGGGTGAATTTTTCATGAACCAGATTGCAAATGATTCTTCCCCAGCTTATGGTGGAGGCTTTAGATCAGCTAATGCAGCTGTTAATAGATACGGTTTACGCTGTACTCTCGAGCATATTCGTTTAACTGGTCAGTTCCCACTGTAA 1494 0.4197 MAPPSDINDLSHPCIYGEFSSSYSERKSGFMKWFGKVFKIGSNRGKGGGHHLQQPVEENMAWRAPPRSLDNRARSKKEEEDLNAKRPSGYRWPTGTDDDYTKALQDRMHSSLHPPYAPLPFYPRGYSMPSHIRICGGCSQEIFYGNCLGVEHSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINASGLIEYRCHPFWNQKYCPSHEYDNTARCCSCERLESRGERYFRLEDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWSRIGGHRLMGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQLLSYLWLDAEVMSGSRTMPSTSSASSSSSYSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNRYGLRCTLEHIRLTGQFPL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00101 497 ProSiteProfiles LIM domain profile. 133 193 IPR001781 -
Car06g00101 497 CDD LIM 162 226 - -
Car06g00101 497 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 497 - -
Car06g00101 497 ProSitePatterns LIM zinc-binding domain signature. 135 169 IPR001781 -
Car06g00101 497 MobiDBLite consensus disorder prediction 69 86 - -
Car06g00101 497 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 161 226 - -
Car06g00101 497 MobiDBLite consensus disorder prediction 44 91 - -
Car06g00101 497 CDD LIM_DA1 135 187 - -
Car06g00101 497 Pfam LIM domain 135 188 IPR001781 -
Car06g00101 497 PANTHER PROTEIN DA1-RELATED 2 20 497 IPR045218 -
Car06g00101 497 Pfam Protein DA1 284 492 IPR022087 -
Car06g00101 497 Gene3D Cysteine Rich Protein 125 192 - -
Car06g00101 497 SMART lim_4 134 186 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00101 Car-Chr6 1246803 1253281 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car06g00101 DA1-like 1.5e-94 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00101 - - gmx:100798829 891.338