Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00096 ATGAATCAAAAGACACAGTTCTCTCTTCTCCCACCAATGAACTCAACAACAATCCTCCTCCTCATAACAACCTCGCTACTTCTACTAACATGCGCCACGCACGTGACATCCGTAACGCCATGTCCACCATGCGGAAACACCACCGTACCCTTCCCACTCAGCACGACCGCCACATGTGGAGACCCTTTATACAAAATCCGTTGCAGCTCCACCGGAACACTAATATTCGACACACTAAACAACTCCTACCCCATCGAATCAATTAACCCGAAAACCCAACGGTTCGTAATCCAACCCGCTCCACTTATCCCTAACACGTGCACAACCACCGATAAAATTCACCAAGGGATCCAGCTTAACAATACTCTCCCTTTCAACATCACCAGCTCAAATACCATTGTTTATCTCAATTGTACCGTCGAGCTTCTCCGATCACCGTTGAACTGCTCATCCGCGAGTCTCTGTCATTCTTACATCAACGCAACCGCTTCTATTTCCGCGTGTCAGTCCGGTCCACTTTGTTGCACTTACCGAACCGGTGGTTCGAGTAACTCTTACATGATTCGTGTTAGGGATTCAGGTTGTAGTGCTTATTCTAGTTTTGTTAACCTTGATTGGGGTCTTTCTGTGAACCGTTGGTCTAGACCCGGTTTGGAGATTCAGTGGGTTTCGCCTAGAGAAACTGTTTGTGGGTCCCAAAAGGATTGTGATTCTGCCACGTCGACTTGTGGGCTTGATTCTTTTTCGTCTAATGGGATCAAAAGGTGTTTTTGTAATGGAGACCTTGTGTGGGACCCTATTCAAGGGCTGTGTACTAAAAAAATTACTTGCCTGAACCCGGATGGATGTCATGACTCGAGCGATAAGACAGCCATAATAGCAGGTACAACATGTGGAGTTGGTGCTGCACTCCTCCTAGCAACAATTGCCTTTCTTCTCTACAAACGCAACAAACGTATATTAGAAGCCCAACGACGCTTAGCTAAAGAGCGTGAAGGAATTCTAAACGCAAGTGGTGGTGGCAGAGCAGCCAAACTCTTCAGTGGCAAAGAAATAAAAAAAGCCACAAATGACTTCTCCGCTGACCGCCTTCTCGGCATTGGTGGCTACGGTGAAGTCTACAAAGGCATTCTTCAAGATGGAACAACAGTAGCCGTTAAATGCGCCAAAATTGGTAACGCCAAAGGGACTGACCAAGTCCTCAATGAAGTTCGCATATTATGTCAAGTTAACCACAGAAACCTTGTTGGGCTACTAGGTTGTTGTGTTGAATTGGAACAACCAGTTTTGGTTTATGAGTTCATTGAAAATGGTACACTTCTTGATCATTTAACAGGTCAAATGCCAAAGGGTCGTGCTTCACTTACTTGGAATCATCGGCTTCATGTCGCACGCGACACTTCGGAAGGTCTTGCTTATCTTCACTTCATGGCTGTTCCTCCTATTTACCATAGAGATGTTAAATCAAGCAACATTCTTCTTGATTTTAAGATGAATGCTAAGGTTTCAGATTTCGGGTTATCACGGTTGGCTCAAACGGATATGAGTCATATCTCAACTTGTGCTCAGGGGACACTTGGGTACCTTGATCCTGAATATTATAGAAACTATCAGTTGACTGATAAAAGTGATGTTTATAGTTTTGGCGTTGTTTTGCTTGAGCTTTTGACGTCTCAGAAGGCTATTGATTTTAATAGGGCTTCCGATGATGTGAATTTGGCGGTTTATGTGCAGAGGATGGTGGAAGAAGAGAAGTTGTTGGATGTTGTTGATCCTGTTTTGAAGAATGGAGCTAGTAATATAGAGGTTGAGACAATGAAGGCGTTGGTGTTTTTGGCTTTGAGTTGTTTGGAAGAGAAGAGACAGAATCGACCTTCGATGAAAGAGGTTTCGGAGGAGATTGAGTATATCATTAGTATTGCCTCTGCAAAGGGAGTGGAGAAGTAG 1947 0.4427 MNQKTQFSLLPPMNSTTILLLITTSLLLLTCATHVTSVTPCPPCGNTTVPFPLSTTATCGDPLYKIRCSSTGTLIFDTLNNSYPIESINPKTQRFVIQPAPLIPNTCTTTDKIHQGIQLNNTLPFNITSSNTIVYLNCTVELLRSPLNCSSASLCHSYINATASISACQSGPLCCTYRTGGSSNSYMIRVRDSGCSAYSSFVNLDWGLSVNRWSRPGLEIQWVSPRETVCGSQKDCDSATSTCGLDSFSSNGIKRCFCNGDLVWDPIQGLCTKKITCLNPDGCHDSSDKTAIIAGTTCGVGAALLLATIAFLLYKRNKRILEAQRRLAKEREGILNASGGGRAAKLFSGKEIKKATNDFSADRLLGIGGYGEVYKGILQDGTTVAVKCAKIGNAKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPVLVYEFIENGTLLDHLTGQMPKGRASLTWNHRLHVARDTSEGLAYLHFMAVPPIYHRDVKSSNILLDFKMNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRASDDVNLAVYVQRMVEEEKLLDVVDPVLKNGASNIEVETMKALVFLALSCLEEKRQNRPSMKEVSEEIEYIISIASAKGVEK 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00096 648 Gene3D Phosphorylase Kinase; domain 1 323 434 - -
Car06g00096 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Car06g00096 648 Pfam Protein tyrosine and serine/threonine kinase 362 633 IPR001245 GO:0004672|GO:0006468
Car06g00096 648 SUPERFAMILY Protein kinase-like (PK-like) 344 633 IPR011009 -
Car06g00096 648 SMART serkin_6 359 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00096 648 Pfam Wall-associated receptor kinase galacturonan-binding 41 97 IPR025287 GO:0030247
Car06g00096 648 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Car06g00096 648 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 643 IPR045274 GO:0007166
Car06g00096 648 Gene3D Transferase(Phosphotransferase) domain 1 435 645 - -
Car06g00096 648 ProSiteProfiles Protein kinase domain profile. 359 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00096 648 PANTHER OS05G0318100 PROTEIN 30 643 - -
Car06g00096 648 CDD STKc_IRAK 365 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00096 Car-Chr6 1180043 1183276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00096 3 647 Receptor kinase-like Gene Family AT5G02070 49.774 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Car06g00096 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00096 - - gmx:100305415 1068.91