Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00094 ATGGGAGAGCGAAAGGGGGAATCATGGGAAGAGTGGTCATGGTCACGCTCCGTAAGCGAAACAGTAAACGGGTCACACGAATTAACGATAAAGGGTTATTCTTTAGCTAAAGGAATGGGTCCCGGAAAATACATCACTAGCGACACTTTCACCGTTGGTGGTTACGATTGGGCCGTTTACTTTTACCCTGATGGAAAAAATCCTGAAGATAATTCTGTTTACGTTTCAGTTTTCATTGCACTTGCTAGCGATGGTACCGATGTCAGGGCTCTTTTCAAATTAACGTTGCTGGATCAAACACCAAAGGGTAACCATAAAGTTCATAGCCACTTCGATCGTCCACTTGAGAGTGGTCCTTATACTTTAAAGTACAGAGGCAGCATGTGGGGTTACAAGCGATTTTTTAGGCGGTCGCTGTTGGAGAATTCGGAGTATTTGAAGAATGATTGTCTTGTCATGCACTGCACGGTTGGTGTTGTCAAGACACGTTTTGAAGGTTCCAAACAAGGTGTTATTGTGCCTGCTCCAGATATGGGTCGTGATTTTAAGAGCTTGTTTGAATCTCAAGTTGGTTGTGACATGGTTTTTAAGGTCAAGAGTGAAAGCTTCAAGGCTCATAAGTTGATTCTTGCTGCCCGTTCGCCTGTGTTTAGAGCTCAGTTTTTTGGACTTGTTGGGGATCCTTGCTTAGAGGAAGTAGTGGTAGAAGATATCGAGCCCTTTATCTTCAAGgcaatgcttctcttcatttactccgacaaacttcctgacatcgatgaggttatgggctctatacctatgtgctcttatactgtcatggtgcagcatctcttggctgctgctgatctctataatcttgacaggctaaaaatgttatgtgaatcaaagttgtctgaagaaatcaatacggagaccgtagccacaacacttgccctggccgagcaacatcactgcccacagctcaaGGCAATCTGTTTAAAATTTATTGCAAATCCGACAAACTTGGGAGCTGTAATGCAATCTGAAGCTTTTTTACATTTGAAAGAGAGCTGCCCCTCAATGTTATTGGAATTGCTAGAGACATTTGCATCAGTGGATGATAACTCAGGTCCAACGTTGACCAGGAAGAGAAGTGGCAGTAGCATATATGGGCAAGATTTAGCAGATGGAGGGGCTGCAGAATCAGTTAATCCAAATGGAAGGCGTGTCAGAAGGCGGACATAA 1224 0.3513 MGERKGESWEEWSWSRSVSETVNGSHELTIKGYSLAKGMGPGKYITSDTFTVGGYDWAVYFYPDGKNPEDNSVYVSVFIALASDGTDVRALFKLTLLDQTPKGNHKVHSHFDRPLESGPYTLKYRGSMWGYKRFFRRSLLENSEYLKNDCLVMHCTVGVVKTRFEGSKQGVIVPAPDMGRDFKSLFESQVGCDMVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPCLEEVVVEDIEPFIFKAMLLFIYSDKLPDIDEVMGSIPMCSYTVMVQHLLAAADLYNLDRLKMLCESKLSEEINTETVATTLALAEQHHCPQLKAICLKFIANPTNLGAVMQSEAFLHLKESCPSMLLELLETFASVDDNSGPTLTRKRSGSSIYGQDLADGGAAESVNPNGRRVRRRT 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00094 407 CDD MATH 24 157 IPR002083 GO:0005515
Car06g00094 407 CDD BTB_POZ_BPM_plant 178 298 - -
Car06g00094 407 ProSiteProfiles BTB domain profile. 192 259 IPR000210 GO:0005515
Car06g00094 407 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 22 162 IPR008974 GO:0005515
Car06g00094 407 SUPERFAMILY POZ domain 175 299 IPR011333 -
Car06g00094 407 Gene3D - 300 381 - -
Car06g00094 407 SUPERFAMILY TRAF domain-like 20 159 - -
Car06g00094 407 Pfam BTB/POZ domain 182 299 IPR000210 GO:0005515
Car06g00094 407 CDD BACK_AtBPM-like 299 361 IPR034090 -
Car06g00094 407 Gene3D Potassium Channel Kv1.1; Chain A 168 296 IPR011333 -
Car06g00094 407 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 11 372 IPR045005 GO:0016567
Car06g00094 407 SMART math_3 28 140 IPR002083 GO:0005515
Car06g00094 407 ProSiteProfiles MATH/TRAF domain profile. 23 157 IPR002083 GO:0005515
Car06g00094 407 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 11 372 - -
Car06g00094 407 SMART BTB_4 192 301 IPR000210 GO:0005515
Car06g00094 407 MobiDBLite consensus disorder prediction 388 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00094 Car-Chr6 1157491 1163434 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car06g00094 BTB 5.2e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00094 K10523 - gmx:100778300 721.85